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Report for CCDS20000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20000.1 Public Mus musculus 6 Slc13a4 23 108 98 CCDS HistoryNCBI Gene:243755Re-query CCDS DB by CCDS ID:20000.1Re-query CCDS DB by GeneID:243755See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20000.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031868.4 ENSMUSP00000031868.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031868.4Link to Ensembl Protein Viewer:ENSMUSP00000031868.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031868Re-query CCDS DB by Protein ID:ENSMUSP00000031868
Original member Current member NCBI NM_172892.3 NP_766480.1 Accepted alive Link to Nucleotide Sequence:NM_172892.3Link to Protein Sequence:NP_766480.1Re-query CCDS DB by Nucleotide ID:NM_172892Re-query CCDS DB by Protein ID:NP_766480Link to BLAST:NP_766480.1

Chromosomal Locations for CCDS 20000.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 35268831 35268968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35270344 35270481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35271609 35271770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35274916 35275040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35275641 35275738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35276449 35276550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35278237 35278338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35279411 35279530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35280309 35280496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35283239 35283319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35284630 35284669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35287347 35287401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35287754 35287917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35289794 35289930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35301725 35301853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35307358 35307456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGGGCTTGCTGCAGGGCCTTCTCCAAGCGAGGAAGCTGCTATTGGTCATCTGTGTGCCGCTGCTGCTGC
TGCCTCTGCCCACCATCTACCCCACCAGCGAAGCTGCGTGTGCTTACGTGTTGCTTGTGACCGCTGTGTA
CTGGGTGTCTGAGGCCGTGCCTCTCGGAGCTGCAGCCCTCGTGCCTGCCTTCCTCTACCCGTTCTTCGGT
GTTCTCCGATCCAGTGAGGTGGCGGCTGAGTACTTCAAGAACACCACGCTGCTGTTGGTGGGCGTCATCT
GTGTGGCAGCAGCTGTGGAGAAGTGGAATTTACACAAGCGCATCGCCCTGCGCATGGTCTTGATGGCGGG
AGCCAAGCCTGGCATGCTCCTGCTGTGTTTCATGTGCTGTACCACCATGCTGTCCATGTGGCTCTCCAAC
ACCTCCACCACCGCCATGGTGATGCCCATCGTGGAGGCGGTGCTGCAGGAGCTCATCAACGCTGAGGAGG
AACAGCTGGCAGCCGGCACTGAGGAGGCTGAGCTCATGGGTCTTGATGTAAACAACAGACAGACGTCCAT
GGAACTCATCTTTGTCAATGAAGACACGTCGGCTGCAGACTTCACTTCTCTGATGCAGAGCAAGAATCTG
AATGGTGTGCCCATGGTCACCAAATCCATCAACACAGCAAACCAACAGCAACAGAAGAAGCAGCAGCCGT
CACAGGAAAAGCCAGGAGTCCCAACCCCCAGCTCCAAGACCCAAGAACTGAACAAGAAGAAGTACAGATC
CCACCATGACCAAATGATCTGCAAGTGCCTTTCTCTGAGCATTTCCTATGCTGCCACCATTGGTGGCCTG
ACCACCATCATAGGCACCTCCACCAGCCTCATTTTCTTAGAGCATTTCAACAACCAGTACCCGGCGGCAG
AGGTGGTGAACTTCGGAACCTGGTTCCTCTTCAGCTTCCCCATCTCGCTCATCATGCTGGTGGTCAGCTG
GTTCTGGATCCACTGGCTCTTCCTGGGCTGCAACTTCAAAGAGACCTGCTCTCTGAGCAAGAAGAAGAAG
ACCAGGAGGGAGGAGCTATCAGAGAAGAGGATCCGGGAGGAATATGAGAAGCTAGGAGACATTAGCTACC
CTGAGATGGTGACCGCCTTTTTCTTCATTCTGATGACGGTGCTGTGGTTTACCCGGGAGCCCGGCTTTGT
CCCTGGCTGGGATTCTTTCTTTGAAAAGAAAGGCTACCGCACTGATGCCACAGTCTCTGTATTCCTTGGC
TTCCTGCTTTTCCTCATTCCAGCAAAGAAGCCCTGCTTTGGGAAAAAGAGTGATGGAACAGGCCAGGAAG
CCTCCAAAGGGATAGAGCCCATCATCACGTGGAAGGACTTCCAGAAAACTATGCCCTGGGAGATTGTCAT
TCTGGTGGGAGGAGGCTACGCCCTGGCTTCTGGCAGCAAGAGCTCTGGCCTCTCCACATGGATCGGGCAC
CAGATGCTGTCCCTGAGCAGCCTCCCGCCATGGGCTATCACCCTGCTGGCGTGTGTCCTGGTGTCCATTG
TCACGGAGTTTGTCAGCAATCCAGCCACCATCACCATCTTCCTGCCCATCCTTTGTACCCTGTCCGAAAC
GCTGCACATCAATCCACTGTACACCCTGGTCCCCGTTACCATGTCAATCTCCTTCGCTGTGATGCTGCCC
GTGGGCAACCCCCCCAACGCCATCGTCTTCAGCTACGGGCACTGCCAGATCAAAGACATGGTGAAAGCCG
GTCTGGGAGTCAATGTCATCGGTCTGGTGATCGTGATGGTGGCCATCAATACTTGGGGAGTTAGCCTCTT
CCACTTGGATGCTTTCCCAGCCTGGGCTAAGGTCAGCAACATCACTGATCAGACCTAA

Translation (625 aa):
MGLLQGLLQARKLLLVICVPLLLLPLPTIYPTSEAACAYVLLVTAVYWVSEAVPLGAAALVPAFLYPFFG
VLRSSEVAAEYFKNTTLLLVGVICVAAAVEKWNLHKRIALRMVLMAGAKPGMLLLCFMCCTTMLSMWLSN
TSTTAMVMPIVEAVLQELINAEEEQLAAGTEEAELMGLDVNNRQTSMELIFVNEDTSAADFTSLMQSKNL
NGVPMVTKSINTANQQQQKKQQPSQEKPGVPTPSSKTQELNKKKYRSHHDQMICKCLSLSISYAATIGGL
TTIIGTSTSLIFLEHFNNQYPAAEVVNFGTWFLFSFPISLIMLVVSWFWIHWLFLGCNFKETCSLSKKKK
TRREELSEKRIREEYEKLGDISYPEMVTAFFFILMTVLWFTREPGFVPGWDSFFEKKGYRTDATVSVFLG
FLLFLIPAKKPCFGKKSDGTGQEASKGIEPIITWKDFQKTMPWEIVILVGGGYALASGSKSSGLSTWIGH
QMLSLSSLPPWAITLLACVLVSIVTEFVSNPATITIFLPILCTLSETLHINPLYTLVPVTMSISFAVMLP
VGNPPNAIVFSYGHCQIKDMVKAGLGVNVIGLVIVMVAINTWGVSLFHLDAFPAWAKVSNITDQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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