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Report for CCDS23128.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23128.1 Public Mus musculus 9 Jaml 23 108 98 CCDS HistoryNCBI Gene:270152Re-query CCDS DB by CCDS ID:23128.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23128.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050020.7 ENSMUSP00000052033.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050020.7Link to Ensembl Protein Viewer:ENSMUSP00000052033.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050020Re-query CCDS DB by Protein ID:ENSMUSP00000052033
Original member Current member EBI ENSMUST00000215880.1 ENSMUSP00000150697.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215880.1Link to Ensembl Protein Viewer:ENSMUSP00000150697.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215880Re-query CCDS DB by Protein ID:ENSMUSP00000150697
Original member Current member NCBI NM_001005421.4 NP_001005421.3 Accepted alive Link to Nucleotide Sequence:NM_001005421.4Link to Protein Sequence:NP_001005421.3Re-query CCDS DB by Nucleotide ID:NM_001005421Re-query CCDS DB by Protein ID:NP_001005421Link to BLAST:NP_001005421.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005421.3 379 Q80UL9 379 100% 0 0

Chromosomal Locations for CCDS 23128.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 45084064 45084106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45086841 45087004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45088613 45088838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45093745 45093857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45097723 45097954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45100995 45101145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45103035 45103095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45104190 45104273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45107379 45107444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGCTTTGCCTCCTGAAACTGATTGTGATTCCAGTAATCCTGGCCCCTGTAGGTTATCCACAGGGCCTGC
CAGGCTTGACCGTTTCCTCCCCTCAGCTGAGAGTGCATGTGGGTGAATCAGTCTTGATGGGATGTGTTGT
CCAGCGCACAGAAGAGAAACACGTGGACAGAGTGGATTGGCTCTTCTCGAAAGATAAAGATGATGCGAGT
GAATATGTGCTGTTCTACTATTCCAACCTTAGCGTGCCTACGGGGCGCTTCCAGAACCGGTCACATTTGG
TGGGGGACACCTTCCATAATGATGGTTCTCTCCTGCTCCAAGATGTTCAGAAGGCCGATGAGGGAATCTA
CACCTGTGAAATCCGCCTCAAAAATGAGAGCATGGTGATGAAAAAGCCCGTGGAACTGTGGGTGCTACCA
GAGGAACCTAAAGATCTCAGAGTCCGAGTAGGTGATACAACTCAGATGAGATGTTCTATCCAGAGCACAG
AAGAGAAACGGGTGACCAAAGTAAACTGGATGTTTTCTTCAGGAAGCCATACTGAGGAGGAGACAGTCTT
GAGCTATGACTCCAACATGCGTAGTGGAAAATTCCAGAGCCTGGGCCGCTTCCGCAACCGTGTAGACCTG
ACAGGTGACATCTCCCGCAATGATGGCTCAATCAAACTTCAAACAGTGAAGGAGTCTGACCAAGGAATCT
ACACTTGCAGCATCTACGTGGGAAAGCTGGAGTCCAGGAAAACCATTGTGCTGCATGTGGTCCAGGACGA
ATTTCAAAGGACAATTTCACCAACTCCTCCAACTGATAAGGGTCAGCAGGGCATCCTGAATGGAAATCAG
CTGGTGATCATTGTGGGGATCGTCTGTGCCACCTTCCTGCTGCTTCCGGTTTTGATATTAATTGTGAAGA
AAGCCAAGTGGAATAAGAGCTCAGTAAGTTCTATGGCTTCTGTGAAGAGCCTGGAGAACAAAGAGAAGAT
TAATCCAGAGAAGCATATCTACTCCTCCATAACTACGTGGGAGACGACAGAGAGAGGAATAAGTGGAGAG
TCAGAGGGCACCTACATGACCATGAATCCAGTTTGGCCTTCTTCCCCCAAAGCATCCAGTTTGGTCCGCT
CTTCAGTCAGATCCAAGTAA

Translation (379 aa):
MLCLLKLIVIPVILAPVGYPQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDAS
EYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP
EEPKDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL
TGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQGILNGNQ
LVIIVGIVCATFLLLPVLILIVKKAKWNKSSVSSMASVKSLENKEKINPEKHIYSSITTWETTERGISGE
SEGTYMTMNPVWPSSPKASSLVRSSVRSK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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