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Report for CCDS39994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39994.1 Public Mus musculus 7 Idh2 23 108 98 CCDS HistoryNCBI Gene:269951Re-query CCDS DB by CCDS ID:39994.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39994.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107384.9 ENSMUSP00000103007.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107384.9Link to Ensembl Protein Viewer:ENSMUSP00000103007.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107384Re-query CCDS DB by Protein ID:ENSMUSP00000103007
Original member Current member NCBI NM_173011.2 NP_766599.2 Accepted alive Link to Nucleotide Sequence:NM_173011.2Link to Protein Sequence:NP_766599.2Re-query CCDS DB by Nucleotide ID:NM_173011Re-query CCDS DB by Protein ID:NP_766599Link to BLAST:NP_766599.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766599.2 452 P54071 452 100% 0 0

Chromosomal Locations for CCDS 39994.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 80095116 80095203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80095621 80095713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80095799 80095896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80096023 80096135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80097804 80097955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80098136 80098272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80098771 80098914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80098998 80099158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80100743 80100908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80103122 80103213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80115162 80115276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGGCCGGCTACCTGCGGGCTGTGAGCTCGCTCTGCAGAGCCTCGGGCTCAGCGCGGACCTGGGCACCGG
CAGCACTGACTGTCCCCAGCTGGCCGGAGCAGCCGCGGCGCCACTATGCTGAGAAGAGGATCAAGGTGGA
GAAGCCGGTAGTGGAGATGGACGGTGACGAGATGACCCGGATCATCTGGCAGTTCATCAAGGAGAAGCTC
ATCCTGCCTCACGTGGATGTTCAGCTCAAGTATTTTGACCTTGGGCTTCCAAACCGTGACCAGACCAATG
ACCAGGTCACCATTGACTCTGCTCTGGCCACCCAGAAGTACAGTGTGGCTGTCAAGTGTGCCACAATCAC
CCCTGATGAGGCCCGTGTGGAAGAGTTCAAGCTGAAGAAAATGTGGAAGAGCCCTAACGGAACGATCCGG
AACATCCTTGGGGGAACCGTCTTCAGAGAGCCAATCATCTGCAAAAACATCCCCCGCCTTGTCCCTGGCT
GGACCAAGCCCATCACCATTGGCAGGCACGCCCATGGCGACCAGTACAAGGCCACAGATTTTGTGGTAGA
TCGAGCTGGCACGTTCAAGTTGGTCTTCACCCCAAAGGATGGCAGCAGTGCCAAGGAGTGGGAGGTGTAT
AACTTCCCTGCCGGAGGCGTTGGGATGGGGATGTACAACACCGACGAGTCCATTTCGGGCTTCGCGCACA
GCTGCTTCCAGTACTCTATCCAGAAGAAATGGCCGCTCTACTTGAGCACCAAGAACACCATTCTGAAGGC
CTATGACGGGCGTTTCAAGGACATCTTCCAGGAGATCTTTGACAAGCACTATAAGACTGACTTCGACAAG
AATAAGATCTGGTATGAACATCGGCTCATCGACGACATGGTGGCCCAGGTGCTCAAGTCTTCCGGTGGCT
TTGTGTGGGCTTGCAAAAACTATGATGGAGACGTGCAGTCTGACATCCTGGCTCAAGGCTTTGGCTCCCT
CGGCCTGATGACATCTGTGCTGGTCTGCCCTGATGGGAAGACAATTGAGGCTGAGGCTGCTCATGGGACA
GTCACCCGCCATTACCGAGAACACCAGAAGGGCCGGCCCACCAGTACCAACCCTATTGCCAGCATCTTTG
CCTGGACACGGGGTCTGGAGCATCGTGGGAAGCTGGATGGGAACCAGGACCTTATCAGGTTTGCACAGAC
GCTGGAGAAGGTGTGCGTGCAGACTGTGGAGAGCGGAGCGATGACCAAGGACCTGGCTGGCTGTATCCAT
GGCCTCAGCAATGTGAAGCTGAACGAGCACTTCCTGAACACCACAGACTTCCTGGACACCATTAAGAGCA
ACCTGGACAGAGCTCTGGGCAAGCAGTAG

Translation (452 aa):
MAGYLRAVSSLCRASGSARTWAPAALTVPSWPEQPRRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKL
ILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIR
NILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKLVFTPKDGSSAKEWEVY
NFPAGGVGMGMYNTDESISGFAHSCFQYSIQKKWPLYLSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDK
NKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT
VTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVESGAMTKDLAGCIH
GLSNVKLNEHFLNTTDFLDTIKSNLDRALGKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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