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Report for CCDS39978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39978.1 Public Mus musculus 7 Chsy1 23 108 98 CCDS HistoryNCBI Gene:269941Re-query CCDS DB by CCDS ID:39978.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036372.7 ENSMUSP00000047487.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036372.7Link to Ensembl Protein Viewer:ENSMUSP00000047487.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036372Re-query CCDS DB by Protein ID:ENSMUSP00000047487
Original member Current member NCBI NM_001081163.2 NP_001074632.1 Accepted alive Link to Nucleotide Sequence:NM_001081163.2Link to Protein Sequence:NP_001074632.1Re-query CCDS DB by Nucleotide ID:NM_001081163Re-query CCDS DB by Protein ID:NP_001074632Link to BLAST:NP_001074632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074632.1 800 Q6ZQ11 800 100% 0 0

Chromosomal Locations for CCDS 39978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 66109911 66110227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66125242 66125737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66170832 66172421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2403 nt):
ATGGCCGCGCGCGGCCGGCGCGCCTGGCTCAGCATGCTGCTCGGGCTCGTGCTGGGCTTCGTGCTGGCCT
CGCGGCTCGTCCTGCCCCGCGCCTCGGAGCTGAAGCGAGTGGGCCCGCGGCGGCGCCCCAGTCCCGAGGG
ATGCCGGCCAGGGCAGGAGGCGTCGCAGCCCGGCGGGGCGCGCGGCGATGCGCGCGGGGCGCAGCTCTGG
CCGCAGGGCTCGGCCGCGGAGGGCGTCCCGCGCGACAGGAACTTTCTCTTCGTGGGAGTCATGACAGCCC
AGAAATACCTGCAGACCCGCGCCGTGGCCGCCTACAGAACATGGTCCAAGACAATTCCCGGGAAGGTGGA
GTTCTTCTCTAGCGAGGGTTCAGATACATCTATACCCATTCCAGTGGTGCCCCTGCGGGGTGTGGATGAC
TCCTACCCACCCCAGAAGAAGTCTTTCATGATGCTCAAGTACATGCACGATCACTACCTGGACAAGTACG
AGTGGTTTATGAGGGCAGACGATGACGTTTACATCAAGGGAGATCGTCTGGAGAGTTTCCTGAGGAGTTT
GAATAGCAGCGAGCCCCTCTTCCTCGGGCAGACAGGACTGGGCACCACAGAAGAAATGGGGAAGCTGGCC
CTTGAGCCTGGAGAGAACTTCTGCATGGGCGGGCCTGGTGTGATTCTGAGCCGGGAAGTGCTTCGGAGAA
TGGCACCACACATTGGCAAGTGTCTCCGGGAAATGTACACCACCCATGAGGATGTAGAGGTGGGGAGATG
TGTCCGGAGATTCGCAGGCGTGCAGTGTGTCTGGTCTTATGAGATGCAGCAGCTTTTTTATGAGAATTAT
GAACAGAACAAGAAAGGGTACATTAGAGATCTCCATAGCAGTAAAATCCACCGAGCGATCACCTTACACC
CCAACAAAAACCCACCGTACCAGTACAGGCTGCACAGTTACATGCTCAGCCGCAAGATCGCCGAGCTGCG
CCATCGCACGATCCAGCTCCACCGGGAGATCGTCCTGATGAGCAAGTACAGCAGCACGGAGATCCAGAAG
GAAGACCTCCAGCTGGGCATCCCCCCCTCCTTCATGCGCTTCCAGGCCCGCCAGAGAGAGGAGATCCTGG
AGTGGGAGTTCCTTACTGGGAAATACTTATACTCAGCCACAGATGGCCAGCCTCCCCGCAGAGGGATGGA
CTCAGCACAGAGGGAGGCCTTGGATGACATAGTCATGCAAGTGATGGAGATGATCAATGCCAACGCCAAG
ACTCGCGGGCGCATCATCGACTTCAAGGAGATCCAGTATGGCTACAGGCGTGTGAACCCCATGTACGGGG
CAGAGTACATTCTGGACCTGCTGCTCCTGTATAAGAAACACAAAGGGAAGAAGATGACGGTCCCTGTGAG
GCGGCACGCGTACCTGCAGCAGACCTTCAGCAAGATGCAGTTTGTGGAGCACGAGGAGCTGGATGCACAA
GAGCTGGCAGACAGAATCAACCAGGACTCTGGGTCCCTGTCATTCCTGTCCAATTCCCTGAAGAAGCTCG
TTGCCTTCCAGCTTCCTGGATCCAAGACGGAGCACAAAGAACCCAAAGAAAAGAAGATCAACATTCTGAT
CCCGTTGTCTGGGCGCTTCGACATGTTTGTGAGGTTCATGGGGAACTTTGAGAAGACGTGTCTCATTCCA
AATCTGAACGTGAAGCTGGTCATTCTGCTTTTCAACTCTGACTCTAACCCCGACAAGGCCAAACAGGTCG
AGCTGATGCGAGATTACCGAGTCAAGTACCCTAAGGCTGACATGCAGGTCCTGCCTGTGTCGGGAGGGTT
TTCAAGAGCACTGGCCCTAGAAGTAGGCTCTTCCCAGTTTAACAATGAGTCTTTGCTCTTCTTCTGTGAT
GTGGACCTGGTGTTTACAGCGGAATTTTTACAGAGGTGCCGAGCCAACACAGTGCTGGGGCAGCAGATCT
ATTTCCCAATCATCTTTAGCCAGTATGATCCAAAGATTGTTTATAGTGGGAAGGTTCCCAGTGACAACCA
TTTTGCCTTTACTCAGAAAACAGGTTTCTGGAGAAACTATGGGTTTGGCATCACTTGTATTTACAAGGGA
GATCTTGTCAGAGTGGGTGGCTTCGATGTCTCCATCCAAGGCTGGGGGCTGGAGGATGTGGACCTCTTTA
ACAAGGTTGTCCAGGCAGGGTTGAAGACATTCAGGAGCCAGGAGGTTGGAGTTGTTCACATCCACCACCC
TGTCGTCTGTGACCCTAATCTGGACCCCAAACAGTATAAAATGTGCTTGGGGTCGAAAGCATCGACATTT
GGGTCCACGCAGCAGCTGGCCGAAATGTGGCTAGAAAAGAATGACCCCAGTTACAGCAAAGGTGGCAGCC
ACGGCTCTGCCAGGACAGCCTGA

Translation (800 aa):
MAARGRRAWLSMLLGLVLGFVLASRLVLPRASELKRVGPRRRPSPEGCRPGQEASQPGGARGDARGAQLW
PQGSAAEGVPRDRNFLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVEFFSSEGSDTSIPIPVVPLRGVDD
SYPPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKGDRLESFLRSLNSSEPLFLGQTGLGTTEEMGKLA
LEPGENFCMGGPGVILSREVLRRMAPHIGKCLREMYTTHEDVEVGRCVRRFAGVQCVWSYEMQQLFYENY
EQNKKGYIRDLHSSKIHRAITLHPNKNPPYQYRLHSYMLSRKIAELRHRTIQLHREIVLMSKYSSTEIQK
EDLQLGIPPSFMRFQARQREEILEWEFLTGKYLYSATDGQPPRRGMDSAQREALDDIVMQVMEMINANAK
TRGRIIDFKEIQYGYRRVNPMYGAEYILDLLLLYKKHKGKKMTVPVRRHAYLQQTFSKMQFVEHEELDAQ
ELADRINQDSGSLSFLSNSLKKLVAFQLPGSKTEHKEPKEKKINILIPLSGRFDMFVRFMGNFEKTCLIP
NLNVKLVILLFNSDSNPDKAKQVELMRDYRVKYPKADMQVLPVSGGFSRALALEVGSSQFNNESLLFFCD
VDLVFTAEFLQRCRANTVLGQQIYFPIIFSQYDPKIVYSGKVPSDNHFAFTQKTGFWRNYGFGITCIYKG
DLVRVGGFDVSIQGWGLEDVDLFNKVVQAGLKTFRSQEVGVVHIHHPVVCDPNLDPKQYKMCLGSKASTF
GSTQQLAEMWLEKNDPSYSKGGSHGSARTA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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