NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51879.1 Public Mus musculus 6 Tmem40 23 108 98 CCDS HistoryNCBI Gene:94346Re-query CCDS DB by CCDS ID:51879.1Re-query CCDS DB by GeneID:94346See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170625.7 ENSMUSP00000130407.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170625.7Link to Ensembl Protein Viewer:ENSMUSP00000130407.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170625Re-query CCDS DB by Protein ID:ENSMUSP00000130407
Original member Current member NCBI NM_001168257.1 NP_001161729.1 Accepted alive Link to Nucleotide Sequence:NM_001168257.1Link to Protein Sequence:NP_001161729.1Re-query CCDS DB by Nucleotide ID:NM_001168257Re-query CCDS DB by Protein ID:NP_001161729Link to BLAST:NP_001161729.1

Chromosomal Locations for CCDS 51879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 115729665 115729684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115730436 115730498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115731007 115731081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115731185 115731256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115733654 115733701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115733995 115734027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115734810 115734845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115736383 115736436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115741541 115741672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115742310 115742379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGAGGCTTCAGGATCTTCTTCCCAGTCTCAAGACAGTGGTGGAGTCCACAGGGAAACGGAAGATCACT
ACCAAGAGACAGAGCTCCACAAGCATCATGGGAAGGCCCGGGAGCGATATAAGAGAGACAAGTCTTCCTC
TTCATCCTCATCCTCGTCATCTTCTTCCTCCTCTTCCTCCTCATCTTCTTCCTCCTCCTCAGGTGCCGAC
CATGGGGAACTGGAAGTGCTAAAGGACGAGCTTCAGCTCTGCGGAGGTGCTGCTGGGGAAATGGTGCCTA
CTGGGGAGTCAGGACTCCGAAGGAGAGGTTCCGGCTCAGCGGAGGGAGAAGTGGAGGCCTCTCAGTTAAG
AAGACTGAACATAAAGAAGGATGATGAGTTTTTCCATTTTGTCCTTCTCTGCTTTGCCATCGGAGCCTTG
CTGGTGTGTTACCACTACTATGCAGACTGGTTCATGTCCCTCGGGGTCGGCCTGCTCACCTTTGCTTCTC
TCGAGACCATTGGCATCTATTTCGGGCTCGTGTACCGGATCCACAGCGTGCTTCAGGGCTTCATCCCCCT
CCTTCAGAAGTTCCGGCTGCCAGGGTTCAGGAGAACTAACTGA

Translation (200 aa):
MEASGSSSQSQDSGGVHRETEDHYQETELHKHHGKARERYKRDKSSSSSSSSSSSSSSSSSSSSSSSGAD
HGELEVLKDELQLCGGAAGEMVPTGESGLRRRGSGSAEGEVEASQLRRLNIKKDDEFFHFVLLCFAIGAL
LVCYHYYADWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH