NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40349.1 Public Mus musculus 8 Cbr4 23 108 98 CCDS HistoryNCBI Gene:234309Re-query CCDS DB by CCDS ID:40349.1Re-query CCDS DB by GeneID:234309See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40349.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034058.13 ENSMUSP00000034058.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034058.13Link to Ensembl Protein Viewer:ENSMUSP00000034058.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034058Re-query CCDS DB by Protein ID:ENSMUSP00000034058
Original member Current member NCBI NM_145595.2 NP_663570.2 Accepted alive Link to Nucleotide Sequence:NM_145595.2Link to Protein Sequence:NP_663570.2Re-query CCDS DB by Nucleotide ID:NM_145595Re-query CCDS DB by Protein ID:NP_663570Link to BLAST:NP_663570.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663570.2 236 Q91VT4 236 100% 0 0

Chromosomal Locations for CCDS 40349.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 61487849 61487990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61489940 61490060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61491545 61491678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61495068 61495202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61503033 61503211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGACAAAGTCTGTGCGGTTTTTGGAGGCTCCCGGGGGATCGGCAGGGCGGTAGCCCAGCTAATGGCCC
AGAAGGGTTACCGTCTGGCGATCGTCTCCAGAAACCTGGAAGTGGCCAAAGTCACCGCCGGCGAGCTCGG
CGGAAACCACTTGGCATTTAGGTGTGATGTTGCCAAAGAACAAGATGTTCAGAGTACATTTCAAGAGATG
GAGAAACATTTAGGTCCAGTAAATTTCTTGGTAAATGCAGCCGGTATCAACAGAGACAGTCTTCTAGTAA
GAACAAAGACTGAAGACATGATCTCTCAGCTGCACACTAACCTCCTGGGCTCCATGCTGACCTGTAAAGC
TGCCATGAAGACAATGATTCAGCAGGGAGGGTCTATTGTTAATGTGGGAAGTATTATTGGTTTGAAAGGC
AACGTTGGCCAGTCTGCATACAGTGCCACCAAAGGAGGACTCGTTGGGTTTTCACGCTCGCTTGCTAAAG
AGGTTGCACGGAAGAAAATCAGAGTGAATGTGGTGGCACCAGGATTTATTCGCACGGATATGACAAGACA
CTTGAAAGAAGAACACTTCAAGAAAAACATTCCTCTTGGGAGGTTTGGAGAAACTCTTGAGGTAGCACAT
GCCGTTGTGTTTCTTTTAGAGTCACCATACATCACAGGCCATGTTCTTATCGTGGATGGAGGATTGCAGC
TCACCGTCTAA

Translation (236 aa):
MDKVCAVFGGSRGIGRAVAQLMAQKGYRLAIVSRNLEVAKVTAGELGGNHLAFRCDVAKEQDVQSTFQEM
EKHLGPVNFLVNAAGINRDSLLVRTKTEDMISQLHTNLLGSMLTCKAAMKTMIQQGGSIVNVGSIIGLKG
NVGQSAYSATKGGLVGFSRSLAKEVARKKIRVNVVAPGFIRTDMTRHLKEEHFKKNIPLGRFGETLEVAH
AVVFLLESPYITGHVLIVDGGLQLTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH