NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38923.1 Public Mus musculus 4 Luzp1 23 108 98 CCDS HistoryNCBI Gene:269593Re-query CCDS DB by CCDS ID:38923.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38923.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001116.4 ENSMUSP00000001116.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001116.4Link to Ensembl Protein Viewer:ENSMUSP00000001116.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001116Re-query CCDS DB by Protein ID:ENSMUSP00000001116
Original member Current member EBI ENSMUST00000063021.6 ENSMUSP00000060619.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063021.6Link to Ensembl Protein Viewer:ENSMUSP00000060619.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000063021Re-query CCDS DB by Protein ID:ENSMUSP00000060619
Original member Current member EBI ENSMUST00000105849.8 ENSMUSP00000101475.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105849.8Link to Ensembl Protein Viewer:ENSMUSP00000101475.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105849Re-query CCDS DB by Protein ID:ENSMUSP00000101475
Original member Current member EBI ENSMUST00000170102.7 ENSMUSP00000130758.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170102.7Link to Ensembl Protein Viewer:ENSMUSP00000130758.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170102Re-query CCDS DB by Protein ID:ENSMUSP00000130758
Original member Current member NCBI NM_024452.2 NP_077772.2 Accepted alive Link to Nucleotide Sequence:NM_024452.2Link to Protein Sequence:NP_077772.2Re-query CCDS DB by Nucleotide ID:NM_024452Re-query CCDS DB by Protein ID:NP_077772Link to BLAST:NP_077772.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077772.2 1068 Q8R4U7 1068 100% 0 0

Chromosomal Locations for CCDS 38923.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136540468 136543518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136545238 136545393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3207 nt):
ATGGCAGAACTCACTAACTACAAGGATGCTGCCTCCAACCGCCACCTGCGATTTAAGTTACAGAGCCTGA
GCCGCCGCCTCGATGAGTTAGAGGAAGCTACAAAAAACCTCCAGAGAGCGGAGGATGAGCTCCTGGACCT
CCAGGACAAGGTGATCCAGGCAGAGGGCAGCGACTCCAGCACGCTGGCTGAGATCGAGGTGCTGCGCCAG
CGGGTACTGAAGATTGAAGGTAAAGATGAGGAAATTAAGAGAGCAGAGGATCTATGTCATACGATGAAGG
AGAAACTTGAAGAGGAAGAAAACCTTACGCGAGAGCTAAAATCTGAAATTGAGCGGCTTCAGAAACGAAT
GGTTGATTTAGAGAAGCTAGAGGAGGCTTTGAGCAGGAGTAAGAATGAATGTTCCCAGCTTTGTTTGAGC
CTCAATGAAGAGAGAAATCTGACCAAGAAAATCTCTTCTGAGTTGGAAATGCTCAGAGTCAAAGTGAAAG
AGCTAGAATCTTCAGAGGACCGCTTAGATAAAACTGAGCAGAGTTTAGTGTCAGAATTAGAAAAGCTAAA
ATCATTAACCCTGAGCTTTGTAAATGAGAGAAAATACTTGAATGAAAAGGAGAAAGAAAATGAGAAAATA
ATAAAAGAGCTTACTCAAAAACTGGAGCAGAACAAGAAAATGAACCGAGACCACATGAGAAATGCTTCCA
CTTTTCTGGAAAGGAATGACCTACGGATAGAGGACGGCATTTCCTCTACACTGTCATCCAAAGAGTCAAA
AAGGAAGGGCAGTCTAGACTACCTAAAGCAGGTCGAGAATGAAACCAGAGACAAATCAGAAAATGAAAAG
AACCGGAATCAGGAAGACAACAAAGTGAAAGACCTTAACCAAGAGATTGAGAAACTTAAGACACAAATCA
AACATTTTGAATCTTTGGAAGAGGAGCTTAAGAAAATGAGGGCTAAAAACAATGACCTTCAGGATAATTA
CCTAACTGAGCTGAATAGAAACAGAAGCTTAGCCAGCCAGCTAGAGGAGATAAAGCTGCAGGTCAGGAAA
CAAAAAGAGTTAGGAAATGGAGACATAGAAGGTGAAGATGCTTTCCTTTTGGGCAGAGGCAGGCACGAGA
GGACTAAGCTCAAAGGCCATGGGAGTGAGGCCTCTGTGTCCAAGCATACATCACGGGAACTGTCTCCCCA
GCATAAGCGGGAAAGGCTCCGGAACAGGGAGTTTGCTCTCAGTAACGAACACTATTCTCTAAGCAGCAAA
CAGGCTTCTTCTCCAGTTTTCACAAACAAAAGGGCAGCAAAAGCCTCCAACATGGGAATGGGTACAGACA
GTGGGACTCAGGAGACAAAGAGAACTGAAGACCGATTTGCACCTGGGTCCTCTCACAGTGAAGGGAAAAG
GGGTAGGGAGCAGCCATCAGTGCTTAGCCGTTACCCCCCTGCTGCCCAGGAGCACACTAAAGTTTGGAAA
GGAGCTCCCAAGCCAGGCACTGAGAGTGGACTTAAGGGAAAAGTAGAGAAGACAACACGAACATTTAGTG
ATTCCACTCATGTATCTGTGCCCAATGATATAGTGGGGAAAGGTGATAAGACTTCTGACCTCTCCTCTGA
GGCACACTGTGGGAAGAGAGGACAGGTGCCTGGCCATGCAAGTCAGGGAACACAGGCTGTAGAGTCTAGC
TGCTCTAAGGCCATCGGAGCTCTCTCCTCATCTCAAAAAGCCTCCTCAGAAGGACTTTCTAAGGGTAAAA
AGACTGCCAATGGCCTAGCGGCTGATGCCAATTTTTCAAATTCTAAAGCTCCAATTTTATCAAAATATCC
TTATAGTTCAAGAAGCCAAGAAAATATACTTCAGGGCTTTTCATTGCCAAATAAAGAAGGAGTTGATCAG
CCTGTAGCAGTTGTGATGGAAGACAGCAGTCAGCATGAAGCCCTGAGGTGCCGTGTCATCAAATCCAGTG
GCAGAGAGAAGCCAGACTCAGATGATGACCTGGACATAGAGTCTTTTGTTACTGCCAAGTTGGTGAACAC
AACTATCACTCCAGAGCCAGAGCCCAAACCACAGCCAAACTCAAGAGAAAAGGTTAAGTCCAGAGGGGGA
ACTAGAACTGCCCTATTTGAAAATGATAAAAATGCTGCAATAGAAAATGACTCTGTGAAACCTACCAGGC
CTTCCTCCAATGCTATAGAATTCCCAGATGCCAACTGTGCTGGGGTGAAAAATCAAAGGCCCTTCAGCCC
TAGAGAGGCCCTGCGGTCTAGAGCAATTATAAAACCCGTTATCATTGATAAGGATGTGAAAAAAATCATG
GGTGGATCTGGAACTGAGGTTGTATTGGAGAAGCAGAAATCCACCTCTAAATCTGTGACAAGCAAAGTGA
CAAGCAGCATTACCATCTACCCCTCTGACAGCAGTGGGCCTAGAGCCGTCCCGAGCGAGGCCCCAAGGGA
GAGGCATACATCCACCAGCAACATCCAGGTGGGGCCCCCAGAGCTCACAGCAATTAGCAACCATGTCAGC
TCCCCTCTTGAGCTCTCTATTCATAAACATGACATCACCTTGCAGCTCACAGAAGCTGAAAGAGTGGGAG
ATGGGTCTCCAAAGAATAGAGCAGAGATGGTGGTCTCTAGGAGTAGCATTCTAATCAAGCCATCAGAGTC
TGTGGAGAAGAATAGTCATGTGCCCCCAGCCGAGACAATCAGGTGGAAAAGCCATAGTGCCTCTTCAGAC
AGCAGACACATCACAGTGCGGAATGCCTGGAAGAGTAAGAGAGACTTGAAATGTTCAGAAGACCCCCCGA
CTGGAATAGGTAGGAACATGGAAGCTACTAACGCCTATACGCAGAGGCCCTGCACAGACTTCTTAGAACT
TGAGCAGCCCAGGTCACAGCCATCTGAACAGGGCGCTCGAAGAGTAGGAAATTCAGGGGATGCTCCTGAG
CTCTCCCCGAGGAGGACCCAAAGTAGCCTCACCGCATCAGAGGTGCTCACCCGCAGGGACCGGATGGGAG
GTGCCATCACTGCTGCCTCCTGCAACCACTCATCAAGCATGGAGGAAGGGGAGGACAGCACATTTGTTAC
CAGCAGGCGAATACACAACCCGCTGGAGCATTCTGAACTGCCTGGAAAGCAGGGACTGCCAGAGCCTGAG
CCAGTTTGGACTGAGGAGCGGCTGCACCCAGCAAAGCCTTATGCTGAGGAAGACTGA

Translation (1068 aa):
MAELTNYKDAASNRHLRFKLQSLSRRLDELEEATKNLQRAEDELLDLQDKVIQAEGSDSSTLAEIEVLRQ
RVLKIEGKDEEIKRAEDLCHTMKEKLEEEENLTRELKSEIERLQKRMVDLEKLEEALSRSKNECSQLCLS
LNEERNLTKKISSELEMLRVKVKELESSEDRLDKTEQSLVSELEKLKSLTLSFVNERKYLNEKEKENEKI
IKELTQKLEQNKKMNRDHMRNASTFLERNDLRIEDGISSTLSSKESKRKGSLDYLKQVENETRDKSENEK
NRNQEDNKVKDLNQEIEKLKTQIKHFESLEEELKKMRAKNNDLQDNYLTELNRNRSLASQLEEIKLQVRK
QKELGNGDIEGEDAFLLGRGRHERTKLKGHGSEASVSKHTSRELSPQHKRERLRNREFALSNEHYSLSSK
QASSPVFTNKRAAKASNMGMGTDSGTQETKRTEDRFAPGSSHSEGKRGREQPSVLSRYPPAAQEHTKVWK
GAPKPGTESGLKGKVEKTTRTFSDSTHVSVPNDIVGKGDKTSDLSSEAHCGKRGQVPGHASQGTQAVESS
CSKAIGALSSSQKASSEGLSKGKKTANGLAADANFSNSKAPILSKYPYSSRSQENILQGFSLPNKEGVDQ
PVAVVMEDSSQHEALRCRVIKSSGREKPDSDDDLDIESFVTAKLVNTTITPEPEPKPQPNSREKVKSRGG
TRTALFENDKNAAIENDSVKPTRPSSNAIEFPDANCAGVKNQRPFSPREALRSRAIIKPVIIDKDVKKIM
GGSGTEVVLEKQKSTSKSVTSKVTSSITIYPSDSSGPRAVPSEAPRERHTSTSNIQVGPPELTAISNHVS
SPLELSIHKHDITLQLTEAERVGDGSPKNRAEMVVSRSSILIKPSESVEKNSHVPPAETIRWKSHSASSD
SRHITVRNAWKSKRDLKCSEDPPTGIGRNMEATNAYTQRPCTDFLELEQPRSQPSEQGARRVGNSGDAPE
LSPRRTQSSLTASEVLTRRDRMGGAITAASCNHSSSMEEGEDSTFVTSRRIHNPLEHSELPGKQGLPEPE
PVWTEERLHPAKPYAEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH