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Report for CCDS38244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38244.1 Public Mus musculus 2 Slc4a11 23 108 98 CCDS HistoryNCBI Gene:269356Re-query CCDS DB by CCDS ID:38244.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099362.10 ENSMUSP00000096963.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099362.10Link to Ensembl Protein Viewer:ENSMUSP00000096963.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099362Re-query CCDS DB by Protein ID:ENSMUSP00000096963
Original member Current member NCBI NM_001081162.1 NP_001074631.1 Accepted alive Link to Nucleotide Sequence:NM_001081162.1Link to Protein Sequence:NP_001074631.1Re-query CCDS DB by Nucleotide ID:NM_001081162Re-query CCDS DB by Protein ID:NP_001074631Link to BLAST:NP_001074631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074631.1 862 A2AJN7 862 100% 0 0

Chromosomal Locations for CCDS 38244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130684434 130684503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130684612 130684781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130684858 130685053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130685231 130685404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130685495 130685663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130685749 130685855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130686031 130686289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130686884 130686957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130687159 130687291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130687371 130687484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130687563 130687688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130687787 130687880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130687954 130688157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130690833 130690956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130691390 130691471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130691549 130691780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130692029 130692078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130692166 130692330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130696041 130696086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2589 nt):
ATGTCACAGAATGAACACTGTCAGGACTCCGGTGAATACTTCTCAGCCGGCACTCAGGGATACTTCAAGA
ACAACATGGAGGATAACCTTGAAGTCCGGGAAGACAGCCTAGGGGATGAGGTCTTTGACACCGTCAACTC
CTCCATTGTGTCTGGCGAGAGCATCCGGTTTTTTGTCAATGTCAACCTTGAAGTGCAGCCCTCCAAATCT
GACTTAGAAGCTGCAACGGGTGGCTGCGTGCTCTTACACACCTCTCGCAAGTATCTGAAATTGAAGAACT
TTGAGGAAGAGGTCCGTGCACACCGGGACCTGGATGGCTTCCTGGCCCAGGCCAGCATCATCCTGAATGA
GACAGCTACCTCACTGGATGATGTCCTCCGAACTATGCTAAACCGCTTTGCCCTGGACCCTAACCACGCA
GAACCTGACTGTGACCTGGACCTGCTCATGGCTAAGCTCTTTACAGATGCTGGAGCCCCTATGGAGAGCA
AGGTCCACCTGCTGTCAGATACCATCCAGGGAGTCACTGCCACTGTCCGAGGGGTGCAGTACGAGCAGTC
TTGGCTCTGCATCATCTGTACCATGAAGACCCTACAGAAACGGCATGTGTGCATCAGCCGCCTGGTTCGA
CCACAGAACTGGGGGGAGAACTCCTGTGAGGTTCGCTTTGTCATCCTGGTGCTGGCCCCACCCAAGATGA
AAAGCACCAAGACTGCAATGGAGGTGGCACGCACCTTTGCCACCATGTTCTCAGACATCACCTTCCGCCA
GAAGCTCCTGAAGACTCGCACAGAGGAAGAATTCAAGGAGGCTCTGGTGCATCAGAGACAGCTGCTCACC
ATGATGATGCCAAGAGCCGCAGGGCACAGCATGAGCTCCCTCCATACTCACAGACACCCTCAGCCCCCGA
AATGCAAGGACTTTTTCCCTTTTGGAAAGGGCATCTGGATGGATATCATGCGCAGGTTTCCTGTGTACCC
AATGGACTTCACTGATGGCATCATTGGGAAAAGCAAGAGCGTGGGCAAATATGTCACCACCACACTCTTC
CTCTACTTCGCCTGCCTCCTACCGACCATTGCTTTTGGATCCCTCAACGATGAGAACACAAACGGGGCCA
TCGATGTGCAGAAGACCATAGCTGGACAGAGCATCGGAGGCCTCTTGTATGCACTGTTCTCTGGGCAGCC
CCTGGTGATACTGTTGACAACCGCACCCCTGGCCATCTACACCCAGGTGATTCGAGTCATCTGTGATGAC
TACAATCTGGACTTCAACGCCTTCTATGCATGGACGGGCCTGTGGAACAGTTTCTTCCTTGCACTTTATG
CCTTCCTCAACCTCAGCCTGCTTATGAATCTCTTTAAGAGGTCTACAGAGGAAATCATTGCTCTGTTCAT
TTCCATCACGTTTGTGCTGGATGCTGTCAAGGGCATGGTCAAAATCTTCGGGAAGTACTACTATGGTCAC
CACTACCACACAAAAAGGACTTCCTCCTTGGTGAGCCTGTTGGGCATTGGCAGAAGCCCCAACAGCAGTC
TCCACACTGCACTCAACGCCAGCCTCTTGGCCAGCCCCGTAGAGATGGCCACAACCAGCAGCCCCGGCAG
CACACACTCGGGCCAGGCTACAGCGGTGCTCAGCCTCCTCATCATGTTGGGCACACTCTGGCTAGGCTAC
ACCCTCTACCAGTTCAAGAAAAGCCCCTACCTGCACCCATGTGTGCGTGAGACCCTGTCTGACTGTGCCC
TGCCCATCGCCGTGCTCTCCTTCTCCCTCATCGGCTCCTATGGCTTCCAGGAAATTGAGATGAGCAAGTT
CCGGTATAACCCCAGCGAGAGCCTTTTTGAGGTGGCACAGATCCACTCTCTGTCCTTCAAGGCCATCGGC
AGTGCCATGGGTCTTGGTTTCCTGCTCTCCTTGCTTTTCTTCATTGAGCAGAACCTGGTGGCGGCCCTGG
TCAATGCACCAGAGAACAGGCTGGTGAAGGGCACTGCCTATCACTGGGATCTCCTGCTACTTGCCATCAT
CAATACGGGGCTGTCTCTGTTTGGGCTACCCTGGATCCACGCCGCCTATCCCCACTCCCCTCTGCATGTG
CGGGCACTGGCCTTAGTGGAGGAACGCGTGGAGAATGGGCACATTTATGAAACGATTGTGGATGTTAAGG
AGACTCGGCTGACGGCGCTGGGTGCCAGTGTCCTGGTGGGCCTGTCCTTGCTGCTGCTGCCATTCCCTCT
GCAGTGGATCCCCAAGCCTGTGCTGTATGGGCTCTTTCTGTACATTGCACTGACCTCCCTGGACGGCAAC
CAGCTCTTCTCGCGTGTGGCCCTGCTGCTCAAGGAGCAGACATCATACCCACCCACACACTACATCCGGA
GAGTGCCCCAAAGGAAGATCCACTACTTCACAGGCCTGCAGATCCTGCAGCTGCTACTGCTCTGTGCCTT
CGGCATGAGCTCCCTGCCCTACATGAAGATGGTCTTTCCCCTCATCATGATTGCCATGATTCCAATCCGC
TACAATCTGCTACCCCGAATCATTGAGGCCAAGTACTTGGATGTCATGGATGCTGAGCATAGGCCCTGA

Translation (862 aa):
MSQNEHCQDSGEYFSAGTQGYFKNNMEDNLEVREDSLGDEVFDTVNSSIVSGESIRFFVNVNLEVQPSKS
DLEAATGGCVLLHTSRKYLKLKNFEEEVRAHRDLDGFLAQASIILNETATSLDDVLRTMLNRFALDPNHA
EPDCDLDLLMAKLFTDAGAPMESKVHLLSDTIQGVTATVRGVQYEQSWLCIICTMKTLQKRHVCISRLVR
PQNWGENSCEVRFVILVLAPPKMKSTKTAMEVARTFATMFSDITFRQKLLKTRTEEEFKEALVHQRQLLT
MMMPRAAGHSMSSLHTHRHPQPPKCKDFFPFGKGIWMDIMRRFPVYPMDFTDGIIGKSKSVGKYVTTTLF
LYFACLLPTIAFGSLNDENTNGAIDVQKTIAGQSIGGLLYALFSGQPLVILLTTAPLAIYTQVIRVICDD
YNLDFNAFYAWTGLWNSFFLALYAFLNLSLLMNLFKRSTEEIIALFISITFVLDAVKGMVKIFGKYYYGH
HYHTKRTSSLVSLLGIGRSPNSSLHTALNASLLASPVEMATTSSPGSTHSGQATAVLSLLIMLGTLWLGY
TLYQFKKSPYLHPCVRETLSDCALPIAVLSFSLIGSYGFQEIEMSKFRYNPSESLFEVAQIHSLSFKAIG
SAMGLGFLLSLLFFIEQNLVAALVNAPENRLVKGTAYHWDLLLLAIINTGLSLFGLPWIHAAYPHSPLHV
RALALVEERVENGHIYETIVDVKETRLTALGASVLVGLSLLLLPFPLQWIPKPVLYGLFLYIALTSLDGN
QLFSRVALLLKEQTSYPPTHYIRRVPQRKIHYFTGLQILQLLLLCAFGMSSLPYMKMVFPLIMIAMIPIR
YNLLPRIIEAKYLDVMDAEHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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