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Report for CCDS25983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25983.1 Public Mus musculus 12 Ppp2r5e 23 108 98 CCDS HistoryNCBI Gene:26932Re-query CCDS DB by CCDS ID:25983.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25983.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021447.8 ENSMUSP00000021447.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021447.8Link to Ensembl Protein Viewer:ENSMUSP00000021447.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021447Re-query CCDS DB by Protein ID:ENSMUSP00000021447
Original member Current member NCBI NM_012024.3 NP_036154.1 Accepted alive Link to Nucleotide Sequence:NM_012024.3Link to Protein Sequence:NP_036154.1Re-query CCDS DB by Nucleotide ID:NM_012024Re-query CCDS DB by Protein ID:NP_036154Link to BLAST:NP_036154.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036154.1 467 Q61151 467 100% 0 0

Chromosomal Locations for CCDS 25983.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 75453714 75453813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75459688 75459789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75462302 75462429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75464874 75464993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75466628 75466678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75466792 75466845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75468512 75468620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75469542 75469601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75469732 75469862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75485132 75485224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75493414 75493515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75515602 75515798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75593169 75593325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGTCCTCAGCACCAACTACTCCTCCATCAGTGGATAAAGTAGACGGATTTTCTCGGAAGTCCGTCAGAA
AAGCCAGACAGAAGAGGTCGCAAAGCTCCTCCCAGTTCAGGTCTCAAGGCAAGCCCATTGAGCTCACGCC
TCTGCCACTGCTGAAAGACGTTCCAACCTCAGAGCAGCCTGAACTGTTCCTAAAGAAACTTCAGCAGTGC
TGTGTCATTTTTGACTTCATGGACACGCTATCTGATCTTAAAATGAAAGAATACAAGCGCTCCACTCTTA
ATGAACTGGTGGACTACATTACAATAAGCAGAGGCTGTCTGACAGAGCAGACTTACCCTGAAGTAGTTAG
AATGGTATCTTGCAATATATTCAGAACTCTCCCTCCTAGTGACAGCAATGAATTCGACCCAGAAGAAGAT
GAACCTACCCTCGAGGCATCATGGCCCCACTTACAGCTTGTATATGAATTTTTCATAAGATTTTTGGAAA
GCCAAGAATTCCAACCCAGCATTGCCAAAAAATACATAGATCAGAAATTTGTATTACAGCTTTTGGAGCT
ATTTGACAGTGAAGACCCTCGAGAACGGGACTATTTAAAAACAGTCTTGCACAGGATTTATGGCAAGTTT
CTCGGGCTTAGAGCATTTATCCGAAAACAAATTAACAATATTTTTCTAAGGTTTGTTTATGAAACAGAAC
ACTTCAATGGTGTAGCTGAACTGCTGGAAATATTAGGAAGTATTATCAATGGCTTTGCTTTACCACTCAA
GGCAGAACACAAACAGTTCCTGGTGAAAGTGTTGATCCCTCTACACACTGTCAGGAGCTTGTCACTCTTT
CATGCACAGCTGGCGTATTGTATAGTACAGTTTCTGGAGAAAGACCCTTCCCTTACAGAACCAGTTATTA
GGGGGCTAATGAAATTTTGGCCTAAAACATGCAGTCAAAAAGAGGTCATGTTCCTCGGGGAGCTGGAAGA
AATCTTGGATGTGATTGAACCGTCACAATTTGTTAAAATCCAAGAACCTTTGTTTAAACAAATTGCCAAG
TGTGTTTCTAGCCCCCATTTTCAGGTGGCAGAAAGGGCACTCTATTATTGGAATAATGAATACATCATGA
GTTTGATAGAAGAAAACTCTAACGTCATCCTTCCCATCATGTTCTCCAGCCTTTATAGGATTTCAAAAGA
GCATTGGAATCCGGCCATTGTGGCATTGGTGTACAACGTGTTGAAGGCATTTATGGAAATGAACAGCACT
ATGTTTGATGAGCTGACAGCCACATACAAGTCAGATCGTCAGCGTGAGAAAAAGAAAGAAAAGGAGCGAG
AAGAACTGTGGAAAAAATTGGAGGATCTGGAGTTAAAGAGAGGTCTTAGACGCGATGGGATAATTCCAAC
TTAA

Translation (467 aa):
MSSAPTTPPSVDKVDGFSRKSVRKARQKRSQSSSQFRSQGKPIELTPLPLLKDVPTSEQPELFLKKLQQC
CVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPSDSNEFDPEED
EPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDSEDPRERDYLKTVLHRIYGKF
LGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLVKVLIPLHTVRSLSLF
HAQLAYCIVQFLEKDPSLTEPVIRGLMKFWPKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAK
CVSSPHFQVAERALYYWNNEYIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNST
MFDELTATYKSDRQREKKKEKEREELWKKLEDLELKRGLRRDGIIPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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