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Report for CCDS15364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15364.1 Public Mus musculus 1 Colgalt2 23 108 98 CCDS HistoryNCBI Gene:269132Re-query CCDS DB by CCDS ID:15364.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15364.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044311.8 ENSMUSP00000037532.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044311.8Link to Ensembl Protein Viewer:ENSMUSP00000037532.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000044311Re-query CCDS DB by Protein ID:ENSMUSP00000037532
Original member NCBI NM_177756.4 NP_808424.3 Updated not alive Link to Nucleotide Sequence:NM_177756.4Link to Protein Sequence:NP_808424.3Re-query CCDS DB by Nucleotide ID:NM_177756Re-query CCDS DB by Protein ID:NP_808424
Current member NCBI NM_177756.5 NP_808424.3 Accepted alive Link to Nucleotide Sequence:NM_177756.5Link to Protein Sequence:NP_808424.3Re-query CCDS DB by Nucleotide ID:NM_177756Re-query CCDS DB by Protein ID:NP_808424Link to BLAST:NP_808424.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808424.3 625 Q6NVG7 625 100% 0 0

Chromosomal Locations for CCDS 15364.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152400138 152400397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152468449 152468559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152471688 152471805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152473095 152473229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152484838 152485042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152489780 152489899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152495802 152495878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152499905 152500011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152502958 152503090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152504078 152504205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152506793 152506999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152508512 152508788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGGCTGCGCGCCTCGCCACTGTCGCCTGCGCGCTGTTCCTGCTGTCCTCCGCCCTGCTCCGCCTCGGCT
GCCGGGCGCGCTTCGCCGCCGAGCCCGACTCGGATGAGGACGGAGAGGAAACGGTGGCGTTCCCCGAGTC
GCCCCCGCAGAAACCCACGGTGTTCGTGGTCGTTCTCGCCCGCAACGCTGCGCATACGCTGCCTTACTTC
CTCGGCTGCCTGGAACGGCTGGACTACCCCAAGAGCAGGATGGCTATCTGGGCAGCCACTGATCACAATG
TGGACAATACAACGGAAATACTCAGGGAGTGGCTGAAAAGTGTGCAGCGTTTGTATCACTATGTGGAGTG
GAGGCCTATGAACGAGCCAGAGTCTTACCCTGATGAAATCGGACCAAAGCACTGGCCAAACTCCCGGTTT
TCTCACGTCATGAAACTGCGACAAGCAGCCCTTCGAACTGCGAGGGAAAAATGGTCAGATTACATCCTGT
TCATAGATGTCGACAACTTCCTGACTAATCCACAGACCCTGAACCTAATGATTGTAGAAAACAAGACCAT
CGTGGCGCCCATGCTGGAGTCCCGGGGTCTATACTCTAACTTCTGGTGCGGAATTACGCCTCAGGGCTTC
TACAAGCGGACCCCAGACTACCTTCAGATTAGAGAATGGAAAAGGATGGGCTGCTTCCCCGTCCCCATGG
TCCACTCCACCTTCCTGATTGACCTCAGGAAAGAGGCCTCTGACAAGCTGGCTTTCTACCCCCCACACCA
GGACTACACCTGGACCTTTGATGACATCATCGTTTTTGCCTTCTCCAGCAGGCAAGCAGGCATCCAGATG
TACCTGTGCAACAAGGAACACTATGGCTACCTGCCCATCCCTCTGAAGCCCCACCAGACACTGCAGGAGG
ACGTCGAGAACCTCATCCATGTACAGATAGAAGCAATGATTGACCATCCTCCAATGGAGCCTTCCCAGTT
CGTGTCAGTTGTCCCTAAGTATCCAGACAAGATGGGATTTGATGAGATTTTCATGATCAACCTCAAACGC
AGGAAGGACAGGCGGGACAGGATGCTGCGCACACTCTACGAACAGGAGATCGAGGTCAAGATTGTCGAGG
CCGTGGATGGGAAGGCACTCAACACAAGCCAGCTGAAGGCCTGGAACATTGAGATGCTGCCAGGGTACCG
GGACCCCTACTCCTCCAGGCCTTTAACCAGGGGTGAAATTGGTTGCTTCCTTAGTCACTTCTCTGTCTGG
AAAGAGGTTATTGACCGAGAGCTGGAGAAGACTCTGGTCATCGAGGATGATGTGCGCTTTGAGCATCAGT
TTAAGAGGAAGCTGATGAAGCTGATGGAGGACATTGACAAGGCTCAGCTGGACTGGGAACTAATTTACAT
CGGTCGAAAAAGAATGCAAGTCAAAGAGCCAGAGAAGGCAGTGCCCAATGTTGTAAATCTCGTCGAAGCT
GATTATTCCTACTGGACCCTGGGCTACGCCATTTCCCTGGAAGGAGCACAGAAGCTTGTCGGAGCCGATC
CCTTTGGGAAGATGTTGCCAGTGGATGAGTTTCTGCCAATCATGTACAACAAGCATCCTGTGGCTGAGTA
CAAGGAGTATTATGAGTCCAGGGACTTGAAAGCCTTCTCCGCAGAGCCTCTGCTCATCTACCCTACGCAC
TACACAGGCCAGCCAGGCTATCTGAGCGACACAGAAACGTCAACCATCTGGGACAATGAGACAGTGGCCA
CTGACTGGGACAGGACACACTCCTGGAAATCCCGGAAGCAAGGACACATCCGCAGCACCGCCAAGAACAC
GGAAGCACTTCCACCGCCAACTTCCCTGGACACTGTGCCTTCAAGAGACGAACTCTGA

Translation (625 aa):
MAARLATVACALFLLSSALLRLGCRARFAAEPDSDEDGEETVAFPESPPQKPTVFVVVLARNAAHTLPYF
LGCLERLDYPKSRMAIWAATDHNVDNTTEILREWLKSVQRLYHYVEWRPMNEPESYPDEIGPKHWPNSRF
SHVMKLRQAALRTAREKWSDYILFIDVDNFLTNPQTLNLMIVENKTIVAPMLESRGLYSNFWCGITPQGF
YKRTPDYLQIREWKRMGCFPVPMVHSTFLIDLRKEASDKLAFYPPHQDYTWTFDDIIVFAFSSRQAGIQM
YLCNKEHYGYLPIPLKPHQTLQEDVENLIHVQIEAMIDHPPMEPSQFVSVVPKYPDKMGFDEIFMINLKR
RKDRRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKAWNIEMLPGYRDPYSSRPLTRGEIGCFLSHFSVW
KEVIDRELEKTLVIEDDVRFEHQFKRKLMKLMEDIDKAQLDWELIYIGRKRMQVKEPEKAVPNVVNLVEA
DYSYWTLGYAISLEGAQKLVGADPFGKMLPVDEFLPIMYNKHPVAEYKEYYESRDLKAFSAEPLLIYPTH
YTGQPGYLSDTETSTIWDNETVATDWDRTHSWKSRKQGHIRSTAKNTEALPPPTSLDTVPSRDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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