NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22473.1 Public Mus musculus 8 Mri1 23 108 98 CCDS HistoryNCBI Gene:67873Re-query CCDS DB by CCDS ID:22473.1Re-query CCDS DB by GeneID:67873See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22473.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126435.7 ENSMUSP00000122623.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126435.7Link to Ensembl Protein Viewer:ENSMUSP00000122623.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126435Re-query CCDS DB by Protein ID:ENSMUSP00000122623
Original member Current member NCBI NM_026423.4 NP_080699.3 Accepted alive Link to Nucleotide Sequence:NM_026423.4Link to Protein Sequence:NP_080699.3Re-query CCDS DB by Nucleotide ID:NM_026423Re-query CCDS DB by Protein ID:NP_080699Link to BLAST:NP_080699.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080699.3 369 Q9CQT1 369 100% 0 0

Chromosomal Locations for CCDS 22473.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84251551 84251711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84253863 84254087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84254176 84254352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84256244 84256419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84256890 84257260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGACACTGGAAGCGATCCGCTACTCGCCCGGCTCGCTGCAGATCCTCGACCAGCTGCAGCTGCCAGAGC
ACTGCCACTATGAGGCACTGAGCTCCGTGCAGCAGGCTAGTGAAGCCATCCGCGCCATGAAGGTGCGCGG
AGCCCCGGCCATCGCGCTGGTCGGCTGCCTCAGCCTGGCCGTGGAGCTGCGGGCCGGCGCCGGCGGTCCC
GGACTCGCTGCTCTGGTGGCCTTCGTGCGAGACCAGCTGCGCCTCTTAGTCGCCGCCCGGCCCACCGCTG
TCAACATGGCCCGCGCCGCCCGCGATCTGGGTCAAGTGGCAGCCCAGGAGGCGGAACGAGAGGGTGCCAC
TGAAGAGACCGTGCGGGAAAGAGTGATCCGCTTCGCCGAGGATATGTTGGAGAAGGACCTCAAAGACAAC
CGGAGCATCGGGGACTTGGGAGCCCGCCATCTCCTAGAGCAGACCAACCCCAGGGGTGGCAAGGTGACCG
TGCTGACCCACTGTAACACGGGTGCTCTGGCCACTGCTGGCTATGGTACAGCGTTAGGTGTGATCCGCTC
ACTGCATGAGATGGGCCGATTGGAGCATACCTTCTGCACAGAGACCCGGCCCTACAACCAGGGAGCCCGG
CTGACGGCCTTCGAGCTGGTGTACGAGCAGATCCCTGCAACTCTCATCACTGACAGCATGGCGGCGGCTG
CCATGGCACACCGGGGTGTGTCAGCCGTGGTGGTGGGAGCTGACCGTGTTGTTGCCAATGGAGACACAGC
CAACAAAATAGGCACCTATCAGCTGGCCATTGTCGCCAAACACCACGGTGTCCCCTTCTATGTGGCTGCC
CCCAGTTCATCCTGTGACCTCCATCTGGAGACTGGAAAGGAGATTGTCATAGAGGAACGCCCCAGCCAGG
AGCTAACTGACCTGAATGGAGTCAGGATTGCTGCACAGGGAATCCGGGTTTGGAATCCTGCCTTTGATGT
CACCCCCCACGAACTCATCACAGGTGGCATCATCACTGAACTGGGTGTCTTTGCCCCTGAGGAGCTCCGA
GGAGCCCTAAGTGCCTCCGTCTTCTCAGAGGGACAGACCCTAGATAGTCCCTGGGTGTGA

Translation (369 aa):
MTLEAIRYSPGSLQILDQLQLPEHCHYEALSSVQQASEAIRAMKVRGAPAIALVGCLSLAVELRAGAGGP
GLAALVAFVRDQLRLLVAARPTAVNMARAARDLGQVAAQEAEREGATEETVRERVIRFAEDMLEKDLKDN
RSIGDLGARHLLEQTNPRGGKVTVLTHCNTGALATAGYGTALGVIRSLHEMGRLEHTFCTETRPYNQGAR
LTAFELVYEQIPATLITDSMAAAAMAHRGVSAVVVGADRVVANGDTANKIGTYQLAIVAKHHGVPFYVAA
PSSSCDLHLETGKEIVIEERPSQELTDLNGVRIAAQGIRVWNPAFDVTPHELITGGIITELGVFAPEELR
GALSASVFSEGQTLDSPWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH