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Report for CCDS27388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27388.1 Public Mus musculus 15 Mtmr12 23 108 98 CCDS HistoryNCBI Gene:268783Re-query CCDS DB by CCDS ID:27388.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27388.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038172.15 ENSMUSP00000041227.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038172.15Link to Ensembl Protein Viewer:ENSMUSP00000041227.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038172Re-query CCDS DB by Protein ID:ENSMUSP00000041227
Original member Current member NCBI NM_172958.4 NP_766546.1 Accepted alive Link to Nucleotide Sequence:NM_172958.4Link to Protein Sequence:NP_766546.1Re-query CCDS DB by Nucleotide ID:NM_172958Re-query CCDS DB by Protein ID:NP_766546Link to BLAST:NP_766546.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766546.1 747 Q80TA6-1 747 100% 0 0

Chromosomal Locations for CCDS 27388.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 12205199 12205279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12230274 12230334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12232756 12232901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12233854 12233926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12236018 12236148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12237929 12238019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12244984 12245113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12251353 12251428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12257627 12257733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12258418 12258542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12259568 12259646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12261841 12261911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12263725 12263897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12265544 12265711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12266607 12266768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 12269502 12270071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGCTGGGGAAAGGGGGAGTCGGCGGTGGCGGCGGCACCAAGGCGCCCAAGCCCTCCTTCGTGTCGTACG
TACGCCCTGAGGAAATTCACACAGATGAAAAGGAAGTAACAGAGAAGGAAGTCACTCTTCACTTGTTGCC
AGGTGAACAGCTGCTTTGTGAAGCCAGCACAGTCCTGAAGTATGTGCAGGAAGATTCGTGTCAGCGCGGC
GTCTATGGGAGACTCGTGTGCACTGACTTCAAGATTTCCTTCCTGGGGGACGAGGACTCGGCCCTGGATA
ATGGCGGGGAAGCTCAGTTTAAGAATAAGATCATAGGAGTAAATGACGTGCCACTGCACTGTGTGGATCA
GATTTATGGAGTGTTTGATGAGAAAAAGAAACCTCTGTTTGGACAACTGAAGAAGTACCCCGAGAAGCTC
GTTATCCATTGCAAAGACCTGCGGGTGCTCCACTTCTGTCTGAGGTACACAAAGGAGGAGGAAGTCAAAA
GGATCGTCAGTGGCATAATCCATCATACCCAGAGCCCCAAACTGCTGAAAAGACTGTTTCTGTTCTCCTA
CGCCGCTGCTGTGCACGGCACTGCCACTGATTCCAGGAACTGTACTGTAATGTTTGACACTCCGAAAGAC
TGGTGTTGGGAGCTGGAGCGGACCAAGGGTAGTGTGAAGTACAGAACAGTGAGTGTGAATGAAGGCTACC
GAGTCTCTGACAGGTTGCCAGCATACTTCGTTGTCCCCACTCCCCTTCCGGAAGACGATGTGAGGCGTTT
TCAGGGCCATGGTATACCAATCTGGTGTTGGTCCTGTCACAATGGAAGTGCCCTTTTGAAAATGTCAGCA
CTGCCCAAAGAACAGGATGACGGTGCTTTGCAAGTTCAGAAGAGCTTCTTGGATGGAATTTACAAGACTA
TCCACAGGCCACCCTACGAGATGGTTAAAACTGAAGACTTATCAAGCAACTTCCTGTCCCTGCAGGAGAT
CCAGAGTGCATACTGTAAATTTAAGCAACTGTTTCTGATAGATAACAGTTCGGAATTTTGGGACACAGAC
ATAAAATGGTTTTCTCTCTTAGAAAGCAGCAGCTGGCTTGATATAATCAGACGCTGCCTGAAGAAAGCAA
TCGAGATTACGGAATGCCTGGAAGCGCAGAACGTGAACGTCCTCCTGTTGGAAGAGAATGCTTCTGATCT
CTGCTGCCTCCTCTCCTCTCTGGTGCAAGTGATGATGGACGCCCACTGTCGAACCAGGACTGGATTCCAG
AGCCTCATCCAAAAGGAATGGGTCATGGGTGGCCACTCTTTCTTGGACCGCTGTAACCATCTCCACCAGA
GTGACAAAGAGGAGGTCCCTATCTTCCTGCTTTTCTTGGACTGCGTCTGGCAGCTGGTGCACCAGTATCC
CCCAGCATTTGAGTTCACAGAGACATACCTGACTGTTTTGTCAGATAGCCTGTATATACCTATTTTTAGC
ACCTTCTTCTTCAATTCACCTCATCAAAAAGATACTAACATGGGTAGGGAAAACCTGGATGCACAAAGCA
AGCCTTTGACTCTGCTCACCGTGTGGGACTGGTCAGTACAGTTTGAACCCAAAGCACAGACGTTACTTAG
AAACCCTCTCTATGTGGAAAAGCCAAAACTGGACAGAGGCCAGCAGAAAGGATCACGTTTCAAACATCAA
CGACAACTTTCTTTGCCACTTACCCAGTCTAAGTCATCTCCCAAAAGAGGATTTTTCAGGGAAGAAACAG
ATCATTTAATCAAGAACCTCCTAGGCAAGAGAATTAGTAAACTTATTAACTCTTCCGATGACCTCCAGGA
CAGCTCAAGGGAGTTCTACGACAGCTGGCATAGCAAGCCCACAGACTACCACGGCCTGTTGTTGCCTCAC
ATTGAGGGGCCGGAAATCAAGGTGTGGGCTCAGCGCTATTTACGTTGGATTCCAGAAGCCCAAATCCTGG
GTGGTGGCAGAGTGGCCACCATGGGCAAACTCTTAGAGATGATGGAGGAAGTGCAGAGCTTGCAGGAGAA
GATAGAGGCAAGACACCACAGGCAGGAGGCTGTCCATGCAGAGGCACCCGGCCTGCTCAGGAACTCAGTC
CGCCTGTCTTCCTTGTTCCCCTTTGCACTGCTCCAGCGACATTCGGCCAAGCCTGTCTTACCCACCAGTG
GCTGGAAAGCTTTAGGAGGCGAAGATGACCTGGCCAAACGAGAAGATGAGTTTGTGGACCTAGGGGACGT
GTGA

Translation (747 aa):
MLGKGGVGGGGGTKAPKPSFVSYVRPEEIHTDEKEVTEKEVTLHLLPGEQLLCEASTVLKYVQEDSCQRG
VYGRLVCTDFKISFLGDEDSALDNGGEAQFKNKIIGVNDVPLHCVDQIYGVFDEKKKPLFGQLKKYPEKL
VIHCKDLRVLHFCLRYTKEEEVKRIVSGIIHHTQSPKLLKRLFLFSYAAAVHGTATDSRNCTVMFDTPKD
WCWELERTKGSVKYRTVSVNEGYRVSDRLPAYFVVPTPLPEDDVRRFQGHGIPIWCWSCHNGSALLKMSA
LPKEQDDGALQVQKSFLDGIYKTIHRPPYEMVKTEDLSSNFLSLQEIQSAYCKFKQLFLIDNSSEFWDTD
IKWFSLLESSSWLDIIRRCLKKAIEITECLEAQNVNVLLLEENASDLCCLLSSLVQVMMDAHCRTRTGFQ
SLIQKEWVMGGHSFLDRCNHLHQSDKEEVPIFLLFLDCVWQLVHQYPPAFEFTETYLTVLSDSLYIPIFS
TFFFNSPHQKDTNMGRENLDAQSKPLTLLTVWDWSVQFEPKAQTLLRNPLYVEKPKLDRGQQKGSRFKHQ
RQLSLPLTQSKSSPKRGFFREETDHLIKNLLGKRISKLINSSDDLQDSSREFYDSWHSKPTDYHGLLLPH
IEGPEIKVWAQRYLRWIPEAQILGGGRVATMGKLLEMMEEVQSLQEKIEARHHRQEAVHAEAPGLLRNSV
RLSSLFPFALLQRHSAKPVLPTSGWKALGGEDDLAKREDEFVDLGDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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