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Report for CCDS15342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15342.1 Public Mus musculus 1 B3galt2 23 108 98 CCDS HistoryNCBI Gene:26878Re-query CCDS DB by CCDS ID:15342.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038252.3 ENSMUSP00000046118.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038252.3Link to Ensembl Protein Viewer:ENSMUSP00000046118.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000038252Re-query CCDS DB by Protein ID:ENSMUSP00000046118
Original member Current member NCBI NM_020025.4 NP_064409.3 Accepted alive Link to Nucleotide Sequence:NM_020025.4Link to Protein Sequence:NP_064409.3Re-query CCDS DB by Nucleotide ID:NM_020025Re-query CCDS DB by Protein ID:NP_064409Link to BLAST:NP_064409.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064409.3 422 O54905 422 100% 0 0

Chromosomal Locations for CCDS 15342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 143646128 143647396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGCTTCAGTGGAGAAGACGACACTGCTGCTTTGCAAAAATGACCTGGAGCCCTAAGAGGTCTCTGCTCC
GGACTCCCCTTACGGGTGTGCTTTCTCTAGTGTTTCTCTTTGCTATGTTCTTGTTTTTCAATCATCATGA
CTGGTTACCAGGTAGACCAGGATTCAAAGAAAATCCTGTGACATACACTTTCCGAGGATTTCGTTCTACA
AAAAGTGAGACAAACCATAGCTCCCTTCGGACCATCTGGAAAGAAGTAGCTCCTCAGACTCTGAGGCCTC
ACACAGCAAGCAACTCCAGTAACACCGAGCTATCACCACAGGGAGTCACAGGGCTGCAGAACACTCTCAG
TGCCAATGGCAGCATTTATAATGAAAAAGGAACTGGACATCCAAACTCTTACCATTTCAAATATATTATC
AATGAGCCTGAAAAATGCCAAGAGAAAAGTCCATTTTTAATACTATTAATAGCTGCAGAACCTGGACAAA
TCGAAGCAAGAAGAGCTATACGGCAAACTTGGGGCAATGAAACTTTGGCACCTGGCATCCAAATCATACG
GGTTTTTTTGTTGGGCATAAGTATTAAGCTAAATGGCTATCTTCAACATGCAATTCAAGAAGAAAGCAGA
CAGTATCATGATATAATTCAGCAGGAATATTTAGATACATACTATAATCTGACCATTAAAACACTAATGG
GTATGAACTGGGTTGCAACATACTGTCCACATACTCCCTATGTTATGAAAACGGACAGTGACATGTTTGT
CAACACAGAATACTTAATACACAAGTTACTAAAGCCAGACCTGCCTCCTAGACATAACTATTTTACTGGC
TATCTAATGAGAGGATATGCACCGAACAGAAACAAAGACAGTAAGTGGTACATGCCACCAGACCTTTACC
CAAGTGAGCGCTACCCTGTCTTCTGCTCAGGAACTGGTTATGTGTTTTCTGGGGATCTGGCAGAGAAGAT
ATTTAAGGTTTCTTTAGGTATCCGTCGTTTGCACTTGGAAGATGTATATGTAGGGATCTGTCTTGCCAAG
TTGAGAGTTGATCCTGTGCCCCCTCCCAATGAGTTCGTGTTCAATCACTGGCGAGTTTCTTATTCAAGCT
GTAAATACAGCCACCTAATTACCTCTCATCAGTTCCAACCTAGTGAACTGATAAAATACTGGAACCATTT
ACAACAAAATAAGCACAACGCCTGTGCCAATGCAGCAAAGGAAAAGGCAGGCAGGTATCGACACCGCAAA
CTACACTAG

Translation (422 aa):
MLQWRRRHCCFAKMTWSPKRSLLRTPLTGVLSLVFLFAMFLFFNHHDWLPGRPGFKENPVTYTFRGFRST
KSETNHSSLRTIWKEVAPQTLRPHTASNSSNTELSPQGVTGLQNTLSANGSIYNEKGTGHPNSYHFKYII
NEPEKCQEKSPFLILLIAAEPGQIEARRAIRQTWGNETLAPGIQIIRVFLLGISIKLNGYLQHAIQEESR
QYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHTPYVMKTDSDMFVNTEYLIHKLLKPDLPPRHNYFTG
YLMRGYAPNRNKDSKWYMPPDLYPSERYPVFCSGTGYVFSGDLAEKIFKVSLGIRRLHLEDVYVGICLAK
LRVDPVPPPNEFVFNHWRVSYSSCKYSHLITSHQFQPSELIKYWNHLQQNKHNACANAAKEKAGRYRHRK
LH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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