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Report for CCDS21541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21541.1 Public Mus musculus 7 Or52i2 23 108 98 CCDS HistoryNCBI Gene:258749Re-query CCDS DB by CCDS ID:21541.1Re-query CCDS DB by GeneID:258749See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21541.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098219.2 ENSMUSP00000095822.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098219.2Link to Ensembl Protein Viewer:ENSMUSP00000095822.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098219Re-query CCDS DB by Protein ID:ENSMUSP00000095822
Original member Current member EBI ENSMUST00000213485.1 ENSMUSP00000149041.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213485.1Link to Ensembl Protein Viewer:ENSMUSP00000149041.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213485Re-query CCDS DB by Protein ID:ENSMUSP00000149041
Original member Current member EBI ENSMUST00000217526.1 ENSMUSP00000150289.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217526.1Link to Ensembl Protein Viewer:ENSMUSP00000150289.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217526Re-query CCDS DB by Protein ID:ENSMUSP00000150289
Original member Current member NCBI NM_146754.2 NP_666965.2 Accepted alive Link to Nucleotide Sequence:NM_146754.2Link to Protein Sequence:NP_666965.2Re-query CCDS DB by Nucleotide ID:NM_146754Re-query CCDS DB by Protein ID:NP_666965Link to BLAST:NP_666965.2

Chromosomal Locations for CCDS 21541.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102669922 102670896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGCTGGGGCCATCCTACAACCACACAATGGAATCCCCTGGCACTTTCTTCCTCTTGGGCATCCCAGGGT
TTCAGTCTTCTTATCTTTGGCTGGCCATCTCACTGAGTACCATGTATAGCATAGCTGTCTTAGGAAATAT
GCTCATTATCATTGTGATCTGCATGGATTCCACTCTACAAGAGCCTATGTACTTCTTTCTATGTGTTCTG
GCTGCTGTGGATATTGTTATGGCTTCTTCTGTGGTACCTAAGATGGTGAGCATCTTCAGTTCAGGAGACA
GCTCCATCAGCTTTAATGCCTGTTTCACTCAGATGTACTTTGTCCATGCGGCCACTGCTGTGGAGACAGG
TCTGCTACTGGCCATGGCTTTTGATCGCTACGTGGCCATCTGCAAGCCCTTACATTACATGAGAATTCTC
ACCCGTCATGTGATGCTGGGAATTAGTGTGACTATCACCGTTAGAGCTGTTATTTTTATGACTCCTTTGA
GTTGGATGTTGAGTCATTTGCCATTTTGTGCCTCCAATGTAGTTCCTCATTCCTATTGTGAACACATGGC
TGTGGCCAAGTTAGCATGTGCTGACCCCATGCCCAGCAGTCTCTACAGTTTGATTTTTTCCTCCATCATT
GTGGGCTCAGATGTGGCCTTCATTTCAGCCTCTTATTCTTTGATTCTCAAGGCAGTTTTTGGACTGTCCT
CAAGGAATGCACAGTGGAAGGCTTTGAGTACATGTGGCTCTCATGTTGGGGTCATGGCTCTGTACTATCT
CCCTGGGATGGCATCCATCTATGTGGCCTGGCTAGGGCAGGACCGAGTTCCACTGCACACTCAAGTGCTA
TTAGCTGACTTGTACCTGATCATCCCACCCACCTTAAACCCTATCATTTATGGTATTAGGACCAGACAAA
TCCGGGAGCGGATATGGAGTCTGCTGACACATTGCTTCTTTTCCCAGTGCACTCAAGGTTCATGA

Translation (324 aa):
MLGPSYNHTMESPGTFFLLGIPGFQSSYLWLAISLSTMYSIAVLGNMLIIIVICMDSTLQEPMYFFLCVL
AAVDIVMASSVVPKMVSIFSSGDSSISFNACFTQMYFVHAATAVETGLLLAMAFDRYVAICKPLHYMRIL
TRHVMLGISVTITVRAVIFMTPLSWMLSHLPFCASNVVPHSYCEHMAVAKLACADPMPSSLYSLIFSSII
VGSDVAFISASYSLILKAVFGLSSRNAQWKALSTCGSHVGVMALYYLPGMASIYVAWLGQDRVPLHTQVL
LADLYLIIPPTLNPIIYGIRTRQIRERIWSLLTHCFFSQCTQGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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