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Report for CCDS29801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29801.1 Public Mus musculus 19 Cyp2c50 23 108 98 CCDS HistoryNCBI Gene:107141Re-query CCDS DB by CCDS ID:29801.1Re-query CCDS DB by GeneID:107141See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29801.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080171.2 ENSMUSP00000079065.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080171.2Link to Ensembl Protein Viewer:ENSMUSP00000079065.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080171Re-query CCDS DB by Protein ID:ENSMUSP00000079065
Original member Current member NCBI NM_134144.2 NP_598905.2 Accepted alive Link to Nucleotide Sequence:NM_134144.2Link to Protein Sequence:NP_598905.2Re-query CCDS DB by Nucleotide ID:NM_134144Re-query CCDS DB by Protein ID:NP_598905Link to BLAST:NP_598905.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598905.2 490 Q91X77-1 490 100% 0 0

Chromosomal Locations for CCDS 29801.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40089700 40089867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40090221 40090383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40090546 40090695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40090945 40091105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40092204 40092380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40096717 40096858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40097955 40098142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40111276 40111417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40113434 40113615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGATCCAATCCTGGTCCTGGTGTTCACCCTCTCCTGTCTGTTTCTCCTCTCACTCTGGAGACAGAGCT
CTGAAAGGGGGAAGCTCCCTCCTGGCCCCACTCCTCTTCCAATTATTGGAAATATCCTTCAGATCAATGT
GAAGGACATCTGCCAATCCTTCACCAATTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGC
AGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGT
TTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGGCATTATATTTAGTAAAGG
AAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGC
ATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATGGCTCACCCT
GTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTT
TGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACC
CCTTGGTTGCAGGTTTGCAATACATTTCCTGTTCTGCTTGATTATTGTCCAGGAAGTCATAACAAAGTTT
TTAAAAATTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGT
TACAATTCCTCGGGACTTTATTGATTATTTCCTAATTAATGGAGGCCAGGAAAACGGCAACTATCCATTG
AAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCA
CAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAGCTAAAGTCCAGGAAGAAAT
TGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCC
ATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACA
TTAAATTCAGGAACTACTTCATCCCCAAGGGGACAAATGTAATAACATCACTGTCATCAGTGCTGCGTGA
TAGCAAAGAGTTCCCCAACCCAGAGAAGTTTGACCCTGGGCACTTTCTAGATGAGAACGGAAAGTTTAAG
AAAAGTGACTACTTCATGCCCTTCTCAACAGGAAAACGGATATGTGCAGGAGAAGGCCTGGCACGCATGG
AGCTGTTCCTATTCCTAACCAGCATTTTACAGAACTTCAACCTGAAACCTCTGGTTCACCCAAAGGACAT
AGATGTAACCCCAATGCTCATTGGATTGGCCTCAGTGCCTCCTGCTTTCCAGCTCTGCTTCATTCCTTCC
TGA

Translation (490 aa):
MDPILVLVFTLSCLFLLSLWRQSSERGKLPPGPTPLPIIGNILQINVKDICQSFTNLSKVYGPVYTLYLG
RKPTVVLHGYEAVKEALVDHGEEFAGRGRLPVFDKATNGMGIIFSKGNVWKNTRRFSLTTLRNLGMGKRS
IEDRVQEEARCLVEELRKTNGSPCDPTFILGCAPCNVICSIIFQDRFDYKDRDFLNLMEKLNEITKIMST
PWLQVCNTFPVLLDYCPGSHNKVFKNYACIKNFLLEKIKEHEESLDVTIPRDFIDYFLINGGQENGNYPL
KNRLEHLAITVTDLFSAGTETTSTTLRYALLLLLKYPHVTAKVQEEIEHVIGKHRRPCMQDRSHMPYTDA
MIHEVQRFIDLVPNSLPHEVTCDIKFRNYFIPKGTNVITSLSSVLRDSKEFPNPEKFDPGHFLDENGKFK
KSDYFMPFSTGKRICAGEGLARMELFLFLTSILQNFNLKPLVHPKDIDVTPMLIGLASVPPAFQLCFIPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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