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Report for CCDS52254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52254.1 Public Mus musculus 7 Hps5 23 108 98 CCDS HistoryNCBI Gene:246694Re-query CCDS DB by CCDS ID:52254.1Re-query CCDS DB by GeneID:246694See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107653.7 ENSMUSP00000103280.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107653.7Link to Ensembl Protein Viewer:ENSMUSP00000103280.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107653Re-query CCDS DB by Protein ID:ENSMUSP00000103280
Original member Current member NCBI NM_001167864.1 NP_001161336.1 Accepted alive Link to Nucleotide Sequence:NM_001167864.1Link to Protein Sequence:NP_001161336.1Re-query CCDS DB by Nucleotide ID:NM_001167864Re-query CCDS DB by Protein ID:NP_001161336Link to BLAST:NP_001161336.1

Chromosomal Locations for CCDS 52254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46761390 46761450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46762943 46763213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46764819 46764925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46767094 46767207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46768033 46768152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46768937 46769092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46769293 46769413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46771607 46772181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46772472 46772543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46773120 46773269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46774814 46774937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46775765 46775951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46776876 46777034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46778021 46778100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46779072 46779160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46783143 46783214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46783471 46783683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46786510 46786643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46788173 46788365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46788928 46788992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46789089 46789199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46790917 46791024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3282 nt):
ATGACTTTTGTGCCAGTGATACCAGAAGCCTACAGCCATGTTCTTGCAGAGTTTGAGTCCTTGGATCCGT
TACTCACAGCCCTGAGGCTGGACTCCAGTCGTCTGAGGTGTACCAGCATAGCTGTGTCTCGGAAATGGTT
GGCGTTAGGCAGCACAGGAGGAGGACTCAATCTCATTCAGAAAGATGGCTGGAAGCAAAGGCTGTTTCTC
TCTCACCGGGAAGGGGCAATCTCTCAGATTGCCTGCTGCTCTCATGATGATGATTATGTTGCTGTAGCTA
CCAGTCAAGGTCTTGTAGTTGTTTGGGAATTAAATCAAGAGCGTCGTGGGAAGCCAGAACGAATTCATGT
GTCCTCAGAACACAAAGGCCGAAAAGTTACTGCCCTCTGTTGGGACACGGCTGTTCTGAGAGTCTTTGTC
GGTGACCATGTGGGCAAAGTATCTGCCATCAAACTCAACACTTTGAAACAAGCAAAAGCAGCTGCTGCCT
TTGTGATGTTTCCTGTGCAGACAGTACTAACAGTGGACTCGTGTGTCGTCCAGTTGGATTACTTGGATGG
AAGATTACTTGTGTCTTCACTGACTCGATCCTTCTTGTGTGACACCGAGAGGGAAAAGTTTTGGAAAATC
GGAAATAAGGAAAGACATGGAGAATATGGGGCTTGTTTCTTCCCCGGGCGGTGTGCTGGGGGCCAGCAGC
CTGTGATCTACTGCGCCCGCCCAGGCTCCCGGATGTGGGAAGTGAACTTTGACGGGGAAGTGCTCAGTAC
ACACCAGTTCAAGAAGCTCCTGTCAATGCCACCCCTCCCTGTGATCACTGCAAGATCAGAGCCTCAGTAT
GATCACACAGTTGGATCCTCCCAGTCTTTGGCATTCCCCAAACTCTTGCATCTTAGTGAACACTGTGTGC
TGACTTGGACAGAAAAGGGAATTTATATTTTCATTCCTCAGAATGTTCAAGTTCTTCTTTGGAGTGAAGT
CAAGGAACGCCTGTTAAGGAGAGGCCTGTGGGACCTGGCTGCTCGCACATGCTGTCTCTTCCAAAATTCT
ATTATTACCAGCAGAGCAAGAAAAACATTGACTGCAGATAAGTTGGAGCATTTGAAGTCTCAGCTGGACC
TTACAGCCTGCAGTGAACTAATTTCTCAGCTGGACGACTTGATCTTAAGGTTCGAGCCTTTGGAGTCGGC
GTGCAGCAGCAGAAGAAGCTCCATCTCATCGCATGAAAGTTTTAGCATCTTGGACTCTGGTATTTATCGT
ATCATCAGTAGTAGAAGAGGCAGTCAGTCCGACGAAGATTCTTGTTCCCTTCACAGCCAGACCTTCTCAG
AAGATGAAAGGCTTAAAGAATTTGCCTCACACCAGGAAGAGGAGCAGCCAGAGCAGGGCTGTGGTGCCAA
TAGGAATGAAGAGAGTGCTTCCCACAGTCCAGTGATGTCTGAGGTAGATAAGAGTGAAGCTTTTCTGCCC
TTCAGCATTGCACTGCCATTTCGTTCTCCATCTCCCCTCGTGTCTCTTCAGGCTGTTAAAGACAGTGTTT
CTAGCTTTGTGCGTAAAACTACTGAGAAGATTGGCACCCTTCACGGAAGCCCCGAGCTGAAAGAGCCTTT
TGAATCCAAGGATGCTGACCGAGCACATGAAGAGGAAGTGAGTGCAGTCACCTGCCCTCTGGAGGAGGAC
ACTGAGGAGAAAGAAATTCATCAACCTCCTAAAGAAGACAGGCTTCAAGAACTCACAGCAGCGACAGCAG
AAGCAATGACCAAGTTATTGGACCCTCTGGTTCTGTTTGAGCCCAAGGTGCTAAGAATGGTTTTACTTGA
GTGGCTTTCACAGTTAGAGAAAACATTTGCCATGAAAGACTTCCCCGGCATTTCCAATACCAGCAGTCCA
ACCGTGAAATCAAACTTGGGTGCACACCTCCTCGGTGAGACAGAAAAGAGAGTATTAGATGAAGAGAGTG
GAGAAGGAAGAAGGGTCTCTTTAGTCACTGAAGAAGCTGGAGGTCAGATAACCTGTGACCCTGTAAGCAA
CCTCAGTGAGCCCTCGGCTGACCGTTTTCGAGTATGCTCTCCATACGCCATCACAAACAGCCTTCAGAGG
GACCTGGCGGAATTGACAACGTTGTGCTTGGAACTGAATGTGTTGACTTCAGCAATGGAAAGCGTAGGTG
GGCATGTGGACCGGGCTTCACAGCAGCTCTCTCCAGAAATCCTGGCTTGTCGTTTCCTAAAGAAGTACTT
TTTTCTTCTGGACTTGAAAAGAGCAAAGGAGAGTATCAAGCTCACTTACGACAGCCCTTGCGTTTGGGAC
ACTTTTGTCGAAGGACTAAAAGAAATGGCAAGATCTAATCCTGCCTACACGGAGCTGGAAGAAGGAGACC
TGCCCACGGGGTTACAGTTACTGGATGGCTCCGTCCCTTCTGATAGTCCCTTGTTGATTGCATTTGCCAC
CCGGTTGTATGATAGATTTGGGGAGTCAGCCCTTCGAGCTTGCATCAAGTTTTATCCGTCCATTTCGCCC
TCCGACATCGCACAGCTTTGCCGTCATCATCCTGCTCAGTTCTTGGCCTATCTAGACAGTCTGGTGAAGT
CCAGGCCGGAAGACCAGTGGCCATCCTTCCTTGAGTTCCTTCTACAACCAGAGTCTTTAAGACTTGAATG
GCTGCTTTTGGCAGTGTCCCATGATGCTCCACCAAGCACAAGTACAGTGGATGATGAAGGGCACCCCAGG
CCCCATTCACACTTGCTTTCTTGGGGTTATAGTCAGCTGATTCTTCTTCTTATTAAACTTCCTGCAGACT
TTACAACCAAAGAGAAAATGACTGACATCTGTAGGTCTTACGGTTTCTGGCCTGGATATCTTACCCTCTG
TCTGGAGCTGGAGAGGAGGAGGGAGGCCTTCACCAACATTGTGTATCTGAATGACATAAGCCTGATGGAA
GGGGACAATGGGTGGATCCCTGAGACCTTGGAGGAATGGAAGCTTCTCCTACATCTACTACAGACCAAGA
GCACAAGGCCAGCTCCCCAGGAGTCACTAAACGGGAGCCTCAGTGATGGGCCAGCCCCTATCAATGTGGA
GAATGTGGCCCTCCTGTTAGCTAAGGCCATGGGCCCAGATCGGGCCTGGTCACTGCTACAGGAGTGTGGT
CTGGCTCTTGAGTTGTCAGAAAAGTTCACCAGAACCTGTGATATCCTGAGGATTGCTGAGAGAAGGCAGA
GAGCGCTGATACAAGGCATGCTTGAGAAGTGTGACCGCTTCCTCTGGTCGCAGCAGGCCTAG

Translation (1093 aa):
MTFVPVIPEAYSHVLAEFESLDPLLTALRLDSSRLRCTSIAVSRKWLALGSTGGGLNLIQKDGWKQRLFL
SHREGAISQIACCSHDDDYVAVATSQGLVVVWELNQERRGKPERIHVSSEHKGRKVTALCWDTAVLRVFV
GDHVGKVSAIKLNTLKQAKAAAAFVMFPVQTVLTVDSCVVQLDYLDGRLLVSSLTRSFLCDTEREKFWKI
GNKERHGEYGACFFPGRCAGGQQPVIYCARPGSRMWEVNFDGEVLSTHQFKKLLSMPPLPVITARSEPQY
DHTVGSSQSLAFPKLLHLSEHCVLTWTEKGIYIFIPQNVQVLLWSEVKERLLRRGLWDLAARTCCLFQNS
IITSRARKTLTADKLEHLKSQLDLTACSELISQLDDLILRFEPLESACSSRRSSISSHESFSILDSGIYR
IISSRRGSQSDEDSCSLHSQTFSEDERLKEFASHQEEEQPEQGCGANRNEESASHSPVMSEVDKSEAFLP
FSIALPFRSPSPLVSLQAVKDSVSSFVRKTTEKIGTLHGSPELKEPFESKDADRAHEEEVSAVTCPLEED
TEEKEIHQPPKEDRLQELTAATAEAMTKLLDPLVLFEPKVLRMVLLEWLSQLEKTFAMKDFPGISNTSSP
TVKSNLGAHLLGETEKRVLDEESGEGRRVSLVTEEAGGQITCDPVSNLSEPSADRFRVCSPYAITNSLQR
DLAELTTLCLELNVLTSAMESVGGHVDRASQQLSPEILACRFLKKYFFLLDLKRAKESIKLTYDSPCVWD
TFVEGLKEMARSNPAYTELEEGDLPTGLQLLDGSVPSDSPLLIAFATRLYDRFGESALRACIKFYPSISP
SDIAQLCRHHPAQFLAYLDSLVKSRPEDQWPSFLEFLLQPESLRLEWLLLAVSHDAPPSTSTVDDEGHPR
PHSHLLSWGYSQLILLLIKLPADFTTKEKMTDICRSYGFWPGYLTLCLELERRREAFTNIVYLNDISLME
GDNGWIPETLEEWKLLLHLLQTKSTRPAPQESLNGSLSDGPAPINVENVALLLAKAMGPDRAWSLLQECG
LALELSEKFTRTCDILRIAERRQRALIQGMLEKCDRFLWSQQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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