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Report for CCDS25856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25856.1 Public Mus musculus 12 Pxdn 23 108 98 CCDS HistoryNCBI Gene:69675Re-query CCDS DB by CCDS ID:25856.1Re-query CCDS DB by GeneID:69675See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122328.7 ENSMUSP00000113703.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122328.7Link to Ensembl Protein Viewer:ENSMUSP00000113703.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122328Re-query CCDS DB by Protein ID:ENSMUSP00000113703
Original member Current member NCBI NM_181395.2 NP_852060.2 Accepted alive Link to Nucleotide Sequence:NM_181395.2Link to Protein Sequence:NP_852060.2Re-query CCDS DB by Nucleotide ID:NM_181395Re-query CCDS DB by Protein ID:NP_852060Link to BLAST:NP_852060.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852060.2 1475 Q3UQ28 1475 100% 0 0

Chromosomal Locations for CCDS 25856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 29938134 29938324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29973993 29974064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29975491 29975562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29979240 29979311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29982294 29982365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29982698 29982769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29984429 29984598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29984867 29984984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29987064 29987233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29990736 29991008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29993374 29993490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29994424 29994582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29995272 29995384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29996433 29996589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29999165 29999273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29999892 30000049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30001921 30003424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30005716 30005850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30006526 30006734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30011834 30011954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30012216 30012345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30014466 30014579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30015451 30015570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4428 nt):
ATGGCCGTGCGCCCCACGCGCCGCTGCCTGCTGGCGCTCCTGCTGTGCTTTGCCTGGTGGGCCATGGCGG
TGGTCGCCTCGAAGCAAGGGGCAGGCTGTCCAAGCCGCTGCCTGTGTTTCCGTACCACCGTGCGCTGCAT
GCATCTGTTGCTGGAGGCCGTGCCCGCCGTGGCGCCGCAGACCTCCATCCTAGATCTTCGGTTCAACAGA
ATCAGAGAGATCCAACCCGGGGCATTCAGGAGGCTGAGGAGCCTGAACACACTGCTTCTTAACAACAACC
AGATCAAGAAGATCCCCAATGGTGCATTTGAGGACCTGGAGAACTTAAAATACCTCTATTTGTACAAGAA
TGAGATCCAATCAATTGACAGGCAAGCATTTAAGGGACTTGCCTCTCTAGAGCAACTGTACCTGCACTTT
AATCAGATAGAAACGCTGGACCCTGAATCCTTCCAGCACCTGCCAAAGCTGGAGAGACTGTTTTTGCACA
ACAACCGTATCACGCACTTAGTTCCTGGGACGTTCAGTCAGTTAGAGTCCATGAAACGGCTGCGATTGGA
CTCGAATGCACTCCACTGTGACTGTGAAATCCTATGGCTAGCGGATCTACTGAAGACCTACGCCCAATCT
GGAAACGCACAAGCAGCAGCTACATGCGAGTATCCCAGACGCATCCAAGGACGCTCTGTGGCTACCATCA
CCCCAGAAGAGCTGAACTGTGAAAGGCCCCGGATTACCTCAGAGCCACAGGATGCAGATGTCACCTCAGG
GAACACAGTGTACTTCACCTGCAGAGCTGAGGGCAACCCCAAACCTGAGATCATCTGGCTTCGAAACAAT
AACGAGTTGAGCATGAAGACGGACTCTCGCTTAAACTTGCTGGACGATGGCACGCTGATGATTCAGAACA
CACAGGAGGCGGATGAGGGTGTCTACCAGTGCATGGCGAAAAATGTGGCTGGAGAGGCGAAAACGCAGGA
GGTGACCCTCAGGTACTTGGGGTCTCCAGCCCGACCCACTTTTGTAATCCAGCCGCAGAACACAGAGGTA
CTGGTGGGTGAGAGTGTCACTCTGGAGTGCAGTGCCACAGGCCACCCTCTGCCTCAGATCACCTGGACAA
GAGGTGACCGCACACCCTTGCCAATTGACCCTCGAGTGAATATCACTCCCTCTGGAGGACTGTATATACA
GAACGTCGCCCAGAGTGACAGCGGCGAGTACACGTGCTTTGCATCCAATAGTGTGGACAGTATCCATGCC
ACAGCCTTCATCATTGTACAAGCCCTTCCTCAGTTCACTGTGACCCCACAGAGCCGAGTGGTCATTGAAG
GGCAGACTGTGGATTTCCAGTGTGCGGCTAAGGGACACCCTCAGCCTGTCATAGCCTGGACCAAGGGAGG
GAGCCAGCTCTCAGTGGACAGGCGGCACCTGGTGCTGTCCTCAGGAACACTCAGGATTTCTGGGGTGGCC
CTGCATGACCAGGGCCAGTATGAGTGCCAGGCCGTCAATATCATTGGCTCCCAGAAGGTCGTGGCCCACC
TGACAGTACAGCCTAGAGTCACCCCGGTATTTGCCAGCATTCCCAGTGACATGACTGTAGAGGTGGGCAC
CAACGTGCAGCTGCCTTGTAGCTCCCAGGGAGAACCAGAGCCAGCCATCACCTGGAACAAGGATGGTGTT
CAGGTAACAGAAAGTGGAAAATTTCACATCAGCCCCGAAGGATTCTTGACCATCAATGATGTTGGCACTG
CCGATGCAGGTCGCTATGAGTGTGTAGCTCGGAACACAATTGGATATGCCTCTGTGAGCATGGTACTCAG
TGTGAATGTTCCTGATGTAAGTCGGAATGGGGATCCCTATGTTGCTACCTCTATTGTTGAAGCCATTGCA
ACTGTTGACAGAGCCATCAACTCTACAAGGACACACTTGTTTGACAGCCGTCCTCGTTCTCCAAATGACC
TGCTCGCTCTGTTCCGGTACCCACGGGATCCATACACAGTGGGACAAGCCAGGGCAGGAGAGATATTCGA
GCGGACCCTGCAGCTGATCCAGGAGCATGTTCAGCATGGCTTGATGGTGGACTTGAATGGAACAAGTTAC
CACTACAATGATCTGGTGTCCCCGCAGTACCTGAGCCTCATCGCCAACCTGTCAGGCTGCACTGCACACC
GCCGCGTGAACAACTGCTCAGACATGTGCTTCCACCAGAAGTATAGGACGCACGATGGCACGTGCAACAA
TCTACAGCACCCGATGTGGGGTGCCTCACTGACCGCCTTTGAGCGCCTGTTGAAGGCTGTGTATGAGAAT
GGGTTCAACACACCCCGGGGCATTAATTCCCAGCGTCAGTACAATGGGCATGTACTACCCATGCCCCGCC
TGGTGTCCACCACACTGATTGGGACAGAGGTGATCACCCCCGATGAGCAGTTTACACACATGCTGATGCA
ATGGGGCCAGTTCCTTGACCATGACCTAGACTCTACAGTGGTAGCCCTGAGCCAGGCCCGCTTCTCTGAC
GGCCAGCATTGCAGCTCTGTGTGCAGCAATGACCCTCCCTGTTTCTCGGTCATGATCCCCCCCAATGATC
CCCGGGTGCGGAGTGGCGCCCGATGCATGTTCTTCGTGCGATCGAGCCCCGTGTGTGGCAGCGGCATGAC
GTCCCTGCTCATGAACTCTGTGTACCCTCGAGAGCAGATCAACCAGCTCACCTCCTACATCGATGCCTCC
AATGTGTACGGCAGCACAGACCACGAAGCCCGCAGCATCCGGGACCTGGCCAGCCACCGTGGCCTGCTGC
GTCAGGGCATTGTGCAGAGGTCTGGCAAGCCCCTGCTTCCCTTTGCCACCGGGCCACCCACTGAGTGCAT
GCGCGATGAGAACGAGAGCCCGATACCATGCTTTCTGGCCGGCGACCACCGTGCCAACGAGCAGCTTGGC
CTGACCAGCATGCATACGCTGTGGTTCCGGGAGCACAACCGCATTGCAGCAGAGCTGTTGAAGCTAAACC
CGCACTGGGATGGGGACACTGTCTACCATGAGACCCGCAAGATAGTCGGGGCAGAGATACAGCACATCAC
CTACCGGCACTGGCTGCCCAAGATCCTGGGGGAGGTGGGCATGAAGATGCTCGGTGAGTACCGGGGCTAC
GACCCCAGTGTCAATGCTGGCATCTTTAATGCCTTTGCCACTGCAGCCTTCAGGTTCGGTCACACTCTGA
TCAACCCTCTGCTCTACCGGCTGGATGAGAACTTTGAGCCCATCCCTCAGGGCCATGTGCCCCTCCACAA
AGCCTTCTTCTCGCCCTTCCGGATTGTCAACGAGGGGGGCATCGACCCACTTCTCCGAGGGCTGTTTGGA
GTGGCAGGGAAGATGCGCATTCCCTCTCAATTGCTGAACACAGAGCTCACGGAGAGGCTGTTCTCCATGG
CCCACACAGTGGCCCTGGACCTGGCTGCCATCAATATCCAGCGAGGCCGGGACCATGGCATCCCACCCTA
CCATGACTACAGAGTCTACTGCAACTTGTCGGCTGCTTACACCTTTGAGGACCTGAAAAATGAGATCAAG
AGCCCTGTGATCCGGGAGAAACTGCAGAGGCTGTATGGCTCGACTCTCAACATTGATCTGTTCCCAGCCC
TCATGGTAGAAGACCTAGTACCTGGCAGCCGCTTGGGGCCCACACTCATGTGCCTGCTCAGCACACAGTT
CCGACGCCTGCGGGATGGAGACAGGTTGTGGTATGAGAACCCAGGCGTGTTCTCCCCCGCCCAGCTGACT
CAGCTCAAGCAGACGTCCCTGGCGAGGATCCTTTGTGACAACTCAGACAACATCACCCGTGTGCAGCAGG
ATGTGTTCAGGGTGGCAGAGTTCCCCCACGGTTATAGCAGCTGTGAGGACATCCCCAGGGTGGACCTGCG
AGTGTGGCAGGACTGTTGTGAAGATTGTAGGACCAGGGGACAATTCAATGCTTTCTCCTACCATTTCCGG
GGAAGACGGTCTCTAGAATTTAGCTATGAGGACGATAAGCCCACAAAGAGAGCCAGGTGGCGGAAAGCAC
TAAGTGTAAAGCATGGCAAACATCTTAGCAATGCCACATCAGCCACCCACGAGCACTTGGAAGGGCCAGC
AACTAATGATCTCAAGGAATTTGTTCTGGAAATGCAAAAGATCATCACAGACCTCAGAAAACAGATAAAC
AGCTTGGAGTCTCGGCTCAGCACCACAGAATGTGTGGATGACAGCGGTGAATCTCACGGCGGCAACACAA
AGTGGAAAAAAGACCCATGCACAGTTTGTGAGTGCAAAAATGGCCAGATCACCTGCTTTGTGGAAGCTTG
CCAGCCTGCAGCCTGCCCCCAGCCTGTGAAAGTGGAAGGCGCTTGCTGTCCCGTCTGCTTAAAGAACACT
GCAGAGGAAAAGCCTTAG

Translation (1475 aa):
MAVRPTRRCLLALLLCFAWWAMAVVASKQGAGCPSRCLCFRTTVRCMHLLLEAVPAVAPQTSILDLRFNR
IREIQPGAFRRLRSLNTLLLNNNQIKKIPNGAFEDLENLKYLYLYKNEIQSIDRQAFKGLASLEQLYLHF
NQIETLDPESFQHLPKLERLFLHNNRITHLVPGTFSQLESMKRLRLDSNALHCDCEILWLADLLKTYAQS
GNAQAAATCEYPRRIQGRSVATITPEELNCERPRITSEPQDADVTSGNTVYFTCRAEGNPKPEIIWLRNN
NELSMKTDSRLNLLDDGTLMIQNTQEADEGVYQCMAKNVAGEAKTQEVTLRYLGSPARPTFVIQPQNTEV
LVGESVTLECSATGHPLPQITWTRGDRTPLPIDPRVNITPSGGLYIQNVAQSDSGEYTCFASNSVDSIHA
TAFIIVQALPQFTVTPQSRVVIEGQTVDFQCAAKGHPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISGVA
LHDQGQYECQAVNIIGSQKVVAHLTVQPRVTPVFASIPSDMTVEVGTNVQLPCSSQGEPEPAITWNKDGV
QVTESGKFHISPEGFLTINDVGTADAGRYECVARNTIGYASVSMVLSVNVPDVSRNGDPYVATSIVEAIA
TVDRAINSTRTHLFDSRPRSPNDLLALFRYPRDPYTVGQARAGEIFERTLQLIQEHVQHGLMVDLNGTSY
HYNDLVSPQYLSLIANLSGCTAHRRVNNCSDMCFHQKYRTHDGTCNNLQHPMWGASLTAFERLLKAVYEN
GFNTPRGINSQRQYNGHVLPMPRLVSTTLIGTEVITPDEQFTHMLMQWGQFLDHDLDSTVVALSQARFSD
GQHCSSVCSNDPPCFSVMIPPNDPRVRSGARCMFFVRSSPVCGSGMTSLLMNSVYPREQINQLTSYIDAS
NVYGSTDHEARSIRDLASHRGLLRQGIVQRSGKPLLPFATGPPTECMRDENESPIPCFLAGDHRANEQLG
LTSMHTLWFREHNRIAAELLKLNPHWDGDTVYHETRKIVGAEIQHITYRHWLPKILGEVGMKMLGEYRGY
DPSVNAGIFNAFATAAFRFGHTLINPLLYRLDENFEPIPQGHVPLHKAFFSPFRIVNEGGIDPLLRGLFG
VAGKMRIPSQLLNTELTERLFSMAHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAYTFEDLKNEIK
SPVIREKLQRLYGSTLNIDLFPALMVEDLVPGSRLGPTLMCLLSTQFRRLRDGDRLWYENPGVFSPAQLT
QLKQTSLARILCDNSDNITRVQQDVFRVAEFPHGYSSCEDIPRVDLRVWQDCCEDCRTRGQFNAFSYHFR
GRRSLEFSYEDDKPTKRARWRKALSVKHGKHLSNATSATHEHLEGPATNDLKEFVLEMQKIITDLRKQIN
SLESRLSTTECVDDSGESHGGNTKWKKDPCTVCECKNGQITCFVEACQPAACPQPVKVEGACCPVCLKNT
AEEKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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