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Report for CCDS51727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51727.1 Public Mus musculus 6 Wasl 23 108 98 CCDS HistoryNCBI Gene:73178Re-query CCDS DB by CCDS ID:51727.1Re-query CCDS DB by GeneID:73178See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041737.7 ENSMUSP00000043968.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041737.7Link to Ensembl Protein Viewer:ENSMUSP00000043968.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041737Re-query CCDS DB by Protein ID:ENSMUSP00000043968
Original member Current member NCBI NM_001167745.1 NP_001161217.1 Accepted alive Link to Nucleotide Sequence:NM_001167745.1Link to Protein Sequence:NP_001161217.1Re-query CCDS DB by Nucleotide ID:NM_001167745Re-query CCDS DB by Protein ID:NP_001161217Link to BLAST:NP_001161217.1

Chromosomal Locations for CCDS 51727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24633056 24633210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24633837 24633933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24634572 24634658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24637649 24637783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24664536 24664643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGAGCTCGGGCCAGCAGCCCCCGCGGAGGGTCACCAACGTGGGCTCCCTGCTGCTCACCCCGCAAGAGA
ACGAGTCTCTCTTCTCCTTCCTCGGCAAGAAATGTGTGACTATGTCTTCAGCAGTGGTGCAGTTGTATGC
AGCAGATCGGAACTGTATGTGGGCAAAGAAGTGCAGTGGTGTCGCTTGTCTGGTTAAGGACAATCCTCAG
AGATCTTATTTTTTAAGAATATTTGACATTAAGGATGGGAAATTACTGTGGGAACAAGAGCTATACAATA
ACTTTGTATATAATAGTCCTAGAGGATATTTTCATACCTTTGCTGGAGATACTTGTCAAGTAGCTCTTAA
TTTTGCCAATGAAGAAGAAGCAAAAAAGTTCCGAAAAGCAGTTACAGACCTGTTGGGCCGACGACAAAGG
AAATCTGCCTTAAGAACTGTCCTGAAGGTCCCAGCCTGTACCATTTTGCTGAGACATAGCCGCACCCTCA
ACTCCTGGACTCATGCTGTTTCTAACCACCATGCAGTCATTAACGCTAACAGGGAGGACATTCCTCGGAG
GAAAAGAGCCCTCCACTGCTAG

Translation (193 aa):
MSSGQQPPRRVTNVGSLLLTPQENESLFSFLGKKCVTMSSAVVQLYAADRNCMWAKKCSGVACLVKDNPQ
RSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQR
KSALRTVLKVPACTILLRHSRTLNSWTHAVSNHHAVINANREDIPRRKRALHC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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