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Report for CCDS16960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16960.1 Public Mus musculus 2 Cpne1 23 108 98 CCDS HistoryNCBI Gene:266692Re-query CCDS DB by CCDS ID:16960.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16960.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109607.9 ENSMUSP00000105236.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109607.9Link to Ensembl Protein Viewer:ENSMUSP00000105236.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109607Re-query CCDS DB by Protein ID:ENSMUSP00000105236
Original member Current member EBI ENSMUST00000109608.8 ENSMUSP00000105237.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109608.8Link to Ensembl Protein Viewer:ENSMUSP00000105237.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109608Re-query CCDS DB by Protein ID:ENSMUSP00000105237
Original member NCBI NM_170588.3 NP_733467.1 Updated not alive Link to Nucleotide Sequence:NM_170588.3Link to Protein Sequence:NP_733467.1Re-query CCDS DB by Nucleotide ID:NM_170588Re-query CCDS DB by Protein ID:NP_733467
Current member NCBI NM_170588.4 NP_733467.1 Accepted alive Link to Nucleotide Sequence:NM_170588.4Link to Protein Sequence:NP_733467.1Re-query CCDS DB by Nucleotide ID:NM_170588Re-query CCDS DB by Protein ID:NP_733467Link to BLAST:NP_733467.1
Original member NCBI NM_170590.3 NP_733469.1 Updated not alive Link to Nucleotide Sequence:NM_170590.3Link to Protein Sequence:NP_733469.1Re-query CCDS DB by Nucleotide ID:NM_170590Re-query CCDS DB by Protein ID:NP_733469
Current member NCBI NM_170590.4 NP_733469.1 Accepted alive Link to Nucleotide Sequence:NM_170590.4Link to Protein Sequence:NP_733469.1Re-query CCDS DB by Nucleotide ID:NM_170590Re-query CCDS DB by Protein ID:NP_733469Link to BLAST:NP_733469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_733467.1 536 Q8C166 536 100% 0 0
NP_733469.1 536 Q8C166 536 100% 0 0

Chromosomal Locations for CCDS 16960.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156073521 156073661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156073799 156074035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156074176 156074309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156076237 156076288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156077399 156077453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156077556 156077689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156077775 156077834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156077929 156078015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156078147 156078233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156078332 156078421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156078574 156078654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156078752 156078823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156078900 156078974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156079063 156079242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156079339 156079464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGCTCATTGCGTGACCTTGGTCCAGCTCTCCGTGTCCTGTGAACATCTCATTGACAAGGACATTGGCT
CCAAGTCTGACCCACTCTGCGTCCTTTTACAGGATGTGGGCGGGGCCTGGGCCGAGCTTTGCCGGACTGA
ACGTGTTCGCAACTGCTCAAGCCCTGAGTTCTCCAAGACTCTGCAGATAGAATACCACTTTGAGACTGTC
CAGAAGCTGCGCTTTGGAATCTATGACATAGACAACAAGACACCAGAGCTGGGGGATGACGACTTCCTGG
GGGGAGCTGAATGTTCCCTAGGTCAGATTGTATCCAGCCAGACGCTGACCTTACCCTTGATGTTGAAGCC
TGGGAAGCCTGCAGGGCGGGGAACCATCACAGTTTCAGCTCAGGAGCTAAAGGACAGCCGTGTAGTAACC
ATGGAGGTGGAAGCTAGAAACCTAGATAAGAAGGACTTCCTAGGGAAATCTGACCCATTCTTGGAGTTCT
TCCGGCAAGGCGATGGGAAGTGGCAGCTGGCATACAGAACCGAGGTAGTCAAGAACAACCTGAACCCTAC
CTGGAAGCGCTTCTCAGTCTCTCTGCAGCATTTCTGTGGCGGGGACCTCAGCACGCCCATTCAGGTGCGC
TGCTCAGACTATGACAGTGACGGCTCACATGATCTCATTGGTACCTTCCATACTACCTTGGCCCAACTGC
AAGCAGTCCCGGCTGAGTTTGAATGTGTCCACCCTGAAAAGCAGCAGAGAAAGAAAAACTACAGGAACTC
TGGAACTGTCCGTGTCAAGACTTGCCGGGTGGAGACAGAGTATTCCTTCCTGGACTATGTGATGGGAGGC
TGCCAGATCAACTTTACTGTGGGTGTGGACTTCACTGGCTCCAATGGCGACCCATCCTCACCTGACTCCC
TGCATTATCTGAGCCCTACAGGAGTCAACGAGTATCTGACAGCTCTGTGGAGCGTGGGCAGCGTGGTTCA
AGACTATGACTCAGACAAGCTATTTCCTGCATTTGGTTTTGGAGCCCAGGTGCCCCCTGATTGGCAGGTC
TCACATGAGTTTGCCTTGAACTTCAATCCCAGTAATCCGTATTGTGCAGGCATCCAGGGTATCGTCGATG
CCTACCGTCAAGCCCTGCCCCAAGTTCGTCTCTATGGCCCCACCAACTTTGCACCCATCATCAACCACGT
GGCCAGGTTTGCAGCCCAAGCTGCACAGCAGAGGTCGGCCTCGCAATACTTCGTGCTGTTGCTTTTGACT
GACGGTGCTGTGACAGATGTGGAGGCCACATGTAAGGCAGTGGTGGACGCCTCAAAGCTGCCCATGTCCG
TGATCATCGTGGGTGTGGGCGGTGCGGATTTTGAGGTCATGGAACAGCTGGATGCAGATGGTGGCCCTCT
CCGCACGCGCTCTGGAGAAGCAGCGGCCCGAGACATAGTGCAGTTCGTGCCTTATCGACGATTTCAGAAT
GCTCCCCGGGAGACACTCGCACAGACCGTACTCGCCGAAGTGCCCACTCAGATGGTTTCCTACTTCAGAG
CCCAAGGCTGGGCCCCGTTAAAGGCACCTCCAACCCCAGGCAAGGGCCCCGCACAGGCCCCACAGGCATA
G

Translation (536 aa):
MAHCVTLVQLSVSCEHLIDKDIGSKSDPLCVLLQDVGGAWAELCRTERVRNCSSPEFSKTLQIEYHFETV
QKLRFGIYDIDNKTPELGDDDFLGGAECSLGQIVSSQTLTLPLMLKPGKPAGRGTITVSAQELKDSRVVT
MEVEARNLDKKDFLGKSDPFLEFFRQGDGKWQLAYRTEVVKNNLNPTWKRFSVSLQHFCGGDLSTPIQVR
CSDYDSDGSHDLIGTFHTTLAQLQAVPAEFECVHPEKQQRKKNYRNSGTVRVKTCRVETEYSFLDYVMGG
CQINFTVGVDFTGSNGDPSSPDSLHYLSPTGVNEYLTALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQV
SHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHVARFAAQAAQQRSASQYFVLLLLT
DGAVTDVEATCKAVVDASKLPMSVIIVGVGGADFEVMEQLDADGGPLRTRSGEAAARDIVQFVPYRRFQN
APRETLAQTVLAEVPTQMVSYFRAQGWAPLKAPPTPGKGPAQAPQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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