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Report for CCDS54835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54835.1 Public Homo sapiens 5 CDH18 24 110 108 CCDS HistoryNCBI Gene:1016Re-query CCDS DB by CCDS ID:54835.1Re-query CCDS DB by GeneID:1016See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54835.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502796.5 ENSP00000422138.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502796.5Link to Ensembl Protein Viewer:ENSP00000422138.1Re-query CCDS DB by Nucleotide ID:ENST00000502796Re-query CCDS DB by Protein ID:ENSP00000422138
Original member Current member NCBI NM_001167667.3 NP_001161139.1 Accepted alive Link to Nucleotide Sequence:NM_001167667.3Link to Protein Sequence:NP_001161139.1Re-query CCDS DB by Nucleotide ID:NM_001167667Re-query CCDS DB by Protein ID:NP_001161139Link to BLAST:NP_001161139.1
Original member Current member NCBI NM_001349561.2 NP_001336490.1 Accepted alive Link to Nucleotide Sequence:NM_001349561.2Link to Protein Sequence:NP_001336490.1Re-query CCDS DB by Nucleotide ID:NM_001349561Re-query CCDS DB by Protein ID:NP_001336490Link to BLAST:NP_001336490.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161139.1 574 Q13634-2 574 100% 0 0
NP_001336490.1 574 Q13634-2 574 100% 0 0

Chromosomal Locations for CCDS 54835.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 19483349 19483443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19502992 19503109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19520657 19520778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19543869 19544005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19571579 19571832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19591057 19591244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19612434 19612601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19721347 19721466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19746942 19747236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19838759 19838986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGAAAATTACTAGCACATCTTGCATCTGTCCAGTCCTAGTGTGTCTCTGTTTTGTGCAGAGGTGTTATG
GAACTGCTCACCACAGCTCCATCAAGGTGATGAGAAACCAAACCAAACACATTGAAGGTGAAACCGAAGT
CCATCATCGTCCCAAAAGGGGATGGGTATGGAATCAGTTCTTTGTTTTAGAAGAACATATGGGACCAGAT
CCTCAGTATGTTGGAAAGCTGCACTCCAATTCTGACAAAGGTGATGGATCTGTCAAGTACATCCTTACTG
GAGAGGGTGCTGGGACTATATTTATCATTGACGATACCACGGGTGATATCCACTCAACAAAAAGCCTAGA
CAGAGAGCAGAAGACCCACTATGTGCTTCATGCTCAAGCTATTGATAGACGTACAAACAAACCTCTTGAG
CCTGAATCCGAGTTCATCATCAAAGTGCAAGACATCAATGACAACGCTCCAAAATTCACAGATGGACCAT
ACATTGTTACTGTGCCTGAAATGTCAGATATGGGTACCTCTGTTCTACAGGTGACAGCTACTGATGCAGA
TGACCCTACCTATGGAAACAGCGCTCGGGTGGTTTACAGCATTCTCCAAGGACAACCCTACTTCTCCGTC
GACCCTAAAACAGGAGTTATTAGAACGGCCTTACATAACATGGACAGAGAAGCCAGAGAACATTACTCCG
TAGTCATTCAAGCCAAAGACATGGCTGGGCAAGTTGGAGGGCTTTCAGGATCTACAACAGTCAACATCAC
CTTAACCGATGTCAATGACAACCCACCACGCTTTCCTCAAAAACACTATCAGCTATATGTTCCTGAGTCA
GCTCAAGTTGGTTCAGCTGTTGGGAAAATCAAGGCAAATGATGCTGACACTGGCTCAAATGCTGACATGA
CCTACTCCATCATAAATGGTGATGGCATGGGAATATTCTCAATCTCCACTGACAAAGAGACCAGAGAAGG
AATCCTTTCTTTAAAGAAGCCACTGAACTATGAGAAAAAGAAGTCATATACCCTCAACATAGAAGGAGCA
AATACACATCTTGATTTTCGCTTTTCTCACTTGGGTCCTTTTAAAGATGCTACTATGCTGAAGATCATTG
TTGGGGATGTAGATGAACCACCACTATTTTCCATGCCTTCCTACCTCATGGAAGTCTACGAAAATGCCAA
GATTGGGACCGTCGTTGGTACAGTTTTGGCACAAGATCCTGACAGTACTAACAGCTTAGTAAGATACTTC
ATCAACTACAATGTTGAAGACGACAGATTTTTCAACATTGATGCCAATACTGGGACCATTAGGACTACAA
AGGTTCTCGACAGAGAAGAAACTCCATGGTACAACATCACAGTCACTGCTTCAGAAATTGATAATCCTGA
TTTGCTGAGCCATGTCACAGTGGGTATTAGAGTTCTGGATGTCAATGACAATCCACCCGAACTTGCCAGG
GAATATGATATTATTGTATGTGAAAATTCTAAGCCTGGCCAGGTTATTCATACCATCAGTGCCACTGATA
AAGATGATTTTGCCAATGGACCAAGGTTTAACTTCTTTCTTGATGAACGCCTGCCTGTAAATCCAAACTT
CACTCTGAAGGACAATGAAGCAGCAGCACCCTCACCATCAGGGTTTGTGCATGCGAGAGAGATGGGCGTG
TGCGGACCTGCCATGCAGAAGCCTTCCTGTCCTCGGCTGGTTTGA

Translation (574 aa):
MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKVMRNQTKHIEGETEVHHRPKRGWVWNQFFVLEEHMGPD
PQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLE
PESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSV
DPKTGVIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPES
AQVGSAVGKIKANDADTGSNADMTYSIINGDGMGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGA
NTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYLMEVYENAKIGTVVGTVLAQDPDSTNSLVRYF
INYNVEDDRFFNIDANTGTIRTTKVLDREETPWYNITVTASEIDNPDLLSHVTVGIRVLDVNDNPPELAR
EYDIIVCENSKPGQVIHTISATDKDDFANGPRFNFFLDERLPVNPNFTLKDNEAAAPSPSGFVHAREMGV
CGPAMQKPSCPRLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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