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Report for CCDS39343.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39343.2 Public Mus musculus 5 Trappc14 23 108 98 CCDS HistoryNCBI Gene:231807Re-query CCDS DB by CCDS ID:39343.2Re-query CCDS DB by GeneID:231807See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 39343.1
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript and conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39343.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048421.13 ENSMUSP00000046898.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048421.13Link to Ensembl Protein Viewer:ENSMUSP00000046898.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048421Re-query CCDS DB by Protein ID:ENSMUSP00000046898
Original member Current member NCBI NM_153161.3 NP_694801.2 Accepted alive Link to Nucleotide Sequence:NM_153161.3Link to Protein Sequence:NP_694801.2Re-query CCDS DB by Nucleotide ID:NM_153161Re-query CCDS DB by Protein ID:NP_694801Link to BLAST:NP_694801.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694801.2 580 Q3UTZ3 580 100% 0 0

Chromosomal Locations for CCDS 39343.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138260241 138260394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138260514 138260707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138260835 138260989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138261553 138261716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138261802 138261884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138262170 138262317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138262414 138262534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138262658 138262744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138262847 138262976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138263067 138263162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138263422 138263832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGGAGTCCCAATGCGACTACTCGATGTACTTTCCGGCTGTGCCGCTACCGCCACGCGCCGAGCTGGCCG
GGGACCCGGGCCGGTACCGGGCGCTGCCCCGGCGCAACCATCTGTACCTGGGGGAGACAGTCCGCTTTCT
GCTGGTGCTGCGCTGCCGAGGCAGCGTGGGGGCTGGCGTTGGGGGCGGCGCGGGCTTGGCATCCCGAGGG
GCCTGGACCGAGCTGGCGACCTCCCTGGCCGCCCTGGCCTCGGTCAGCGCAGGAGGAGCGCTGCCAGGGT
GCGGCAGCGCCGGCGACCAGGATGCTGACCCCCCGGGGGGAGGGGACCCGGGGGGCGGGGGTTTGTTTCG
AGGTTGCAGCCCCCTTCTCACCCACGGCCAGGGCCCTGCTACCTCAGGGGGCGCGACCACGCTGCCTGTG
GAAGAACCGATTGTGTCCACAGATGAAGTCATCTTCCCACTCACCGTTTCACTGGATAGACTGCCCCCAG
GGACACCCAAGGCCAAGATTGTAGTGACCGTGTGGAAGCGGGAGGTCGAGGCACCAGAAGTCAGAGATCA
AGGCTACCTGCGCTTGCTACAGACTCGATCTCCTGGGGAGACTTTCCGTGGAGAACAGAGCGCCTTCAAG
GCCCAAGTGAGCACCCTATTGACGCTGCTGCCCCCTCCAGTTCTGAAATGCCGGCAGTTCACTGTGGCTG
GAAAGCACTTGACCGTGCTCAAGGTGCTGAATAGCTCTTCCCAGGAAGAGATCTCCATCTGGGATATCCG
AATCCTCCCCAACTTCAATGCCAGTTATCTACCTGTCATGCCTGATGGCTCTGTGCTGCTGGTGGACAAT
GTCTGTCACCAGTCTGGGGAAGTCTCCATGGGATCCTTCTGTCGGCTTCCTGGAACATCTGGCTACTTCC
CCTGTCCACTTAGTGCCCTGGAGGAACACAACTTCCTGTTCCAGCTGAGAGGGGGTGAGCAGCCCCCTCC
TGGGGCCAAGGAGGGCCTTGAAGTCCCCTTGATTGCCGTGGTTCAGTGGTCCACGCCGAAGCTGCCCTTC
ACCCAGAGCATTTACACCCACTACCGCCTGCCCAGTGTCCGCCTAGACCGCCCCTGCTTTGTGATGACTG
CTTCTTGTGAGTCCCCTGTTCGGACCTACGAGCGTTTCACTGTCACCTACACGCTGCTCAACAACCTCCA
AGACTTCCTTGCTGTGAGGCTTGTGTGGACCCCGGAACATGCACAGGCTGGAAAGCAGCTGTGTGAGGAG
GAGCGCCGGGCCATGCAGGCAGCCCTAGACTCCATCGTCTGTCACACACCCCTCAATAATCTTGGCTTCT
CCCGGAAGGGCAGCGCGCTTACCTTCAGTGTGGCCTTCCAGGCCCTGAGGACGGGGCTCTTTGAGCTGAG
CCAGCACATGAAACTGAAGCTGCAGTTCACTGCCAGCGTGTCCCACCCTCCGCCTGAAGCCCGGCCCCTG
TCCCGAAAGAGCAGCCCCAGCAGTCCTGCTGTCCGAGACCTGGTGGAGAGACACCAGGCCAGCCTGGGCC
GTTCTCAATCTTTCTCCCACCAGCAGCCTTCCCGTAGCCACCTCATGAGGTCAGGCAGTGTGATGGAACG
CAGGGCCATCACACCCCCTGTGGCCTCTCCCGTCGGCCGTCCCCTCTACCTGCCCCCCGACAAGGCTGTG
CTTTCTCTTGATAAGATTGCCAAGCGTGAGTGTAAAGTCCTGGTGGTGGAGCCCGTCAAGTAG

Translation (580 aa):
MESQCDYSMYFPAVPLPPRAELAGDPGRYRALPRRNHLYLGETVRFLLVLRCRGSVGAGVGGGAGLASRG
AWTELATSLAALASVSAGGALPGCGSAGDQDADPPGGGDPGGGGLFRGCSPLLTHGQGPATSGGATTLPV
EEPIVSTDEVIFPLTVSLDRLPPGTPKAKIVVTVWKREVEAPEVRDQGYLRLLQTRSPGETFRGEQSAFK
AQVSTLLTLLPPPVLKCRQFTVAGKHLTVLKVLNSSSQEEISIWDIRILPNFNASYLPVMPDGSVLLVDN
VCHQSGEVSMGSFCRLPGTSGYFPCPLSALEEHNFLFQLRGGEQPPPGAKEGLEVPLIAVVQWSTPKLPF
TQSIYTHYRLPSVRLDRPCFVMTASCESPVRTYERFTVTYTLLNNLQDFLAVRLVWTPEHAQAGKQLCEE
ERRAMQAALDSIVCHTPLNNLGFSRKGSALTFSVAFQALRTGLFELSQHMKLKLQFTASVSHPPPEARPL
SRKSSPSSPAVRDLVERHQASLGRSQSFSHQQPSRSHLMRSGSVMERRAITPPVASPVGRPLYLPPDKAV
LSLDKIAKRECKVLVVEPVK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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