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Report for CCDS16011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16011.1 Public Mus musculus 2 Nr5a1 23 108 98 CCDS HistoryNCBI Gene:26423Re-query CCDS DB by CCDS ID:16011.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16011.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028084.4 ENSMUSP00000028084.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028084.4Link to Ensembl Protein Viewer:ENSMUSP00000028084.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028084Re-query CCDS DB by Protein ID:ENSMUSP00000028084
Original member Current member EBI ENSMUST00000112883.7 ENSMUSP00000108504.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112883.7Link to Ensembl Protein Viewer:ENSMUSP00000108504.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112883Re-query CCDS DB by Protein ID:ENSMUSP00000108504
Original member Current member NCBI NM_001316687.1 NP_001303616.1 Accepted alive Link to Nucleotide Sequence:NM_001316687.1Link to Protein Sequence:NP_001303616.1Re-query CCDS DB by Nucleotide ID:NM_001316687Re-query CCDS DB by Protein ID:NP_001303616Link to BLAST:NP_001303616.1
Original member Current member NCBI NM_139051.3 NP_620639.1 Accepted alive Link to Nucleotide Sequence:NM_139051.3Link to Protein Sequence:NP_620639.1Re-query CCDS DB by Nucleotide ID:NM_139051Re-query CCDS DB by Protein ID:NP_620639Link to BLAST:NP_620639.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303616.1 462 P33242-1 462 100% 0 0
NP_620639.1 462 P33242-1 462 100% 0 0

Chromosomal Locations for CCDS 16011.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 38694017 38694264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38700175 38700322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38701967 38702086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38707911 38708539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38710410 38710551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38710656 38710757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGGACTATTCGTACGACGAGGACCTGGACGAGCTGTGTCCAGTGTGTGGTGACAAGGTGTCGGGCTACC
ACTACGGGCTGCTCACGTGCGAGAGCTGCAAGGGCTTCTTCAAGCGCACAGTCCAGAACAACAAGCATTA
CACGTGCACCGAGAGTCAGAGCTGCAAAATCGACAAGACGCAGCGTAAGCGCTGTCCCTTCTGCCGCTTC
CAGAAGTGCCTGACGGTGGGCATGCGCCTGGAAGCTGTGCGTGCTGATCGAATGCGGGGTGGCCGGAACA
AGTTTGGGCCCATGTACAAGAGAGACCGGGCCTTGAAGCAGCAGAAGAAAGCACAGATTCGGGCCAATGG
CTTCAAGCTGGAGACCGGACCACCGATGGGGGTGCCCCCGCCACCCCCTCCCCCACCGGACTACATGTTA
CCCCCTAGCCTGCACGCACCGGAGCCCAAGGCCCTGGTCTCTGGCCCACCCAGTGGGCCGCTGGGTGACT
TTGGAGCCCCATCTCTACCCATGGCTGTGCCTGGTCCCCACGGACCTCTGGCTGGCTACCTCTATCCTGC
CTTCTCTAACCGCACCATCAAGTCTGAGTATCCAGAGCCCTATGCCAGCCCCCCACAACAGCCAGGGCCA
CCCTACAGCTATCCAGAGCCCTTCTCAGGAGGGCCCAATGTACCAGAGCTCATATTGCAGCTGCTGCAAC
TAGAGCCAGAGGAGGACCAGGTGCGCGCTCGCATCGTGGGCTGTCTGCAGGAGCCAGCCAAAAGCCGCTC
TGACCAGCCAGCGCCCTTCAGCCTCCTCTGCAGAATGGCCGACCAGACCTTTATCTCCATTGTCGACTGG
GCACGAAGGTGCATGGTCTTTAAGGAGCTGGAGGTGGCTGACCAGATGACACTGCTGCAGAACTGTTGGA
GCGAGCTGCTGGTGTTGGACCACATCTACCGCCAGGTCCAGTACGGCAAGGAAGACAGCATCCTGCTGGT
TACTGGACAGGAGGTGGAGCTGAGCACAGTGGCTGTGCAGGCTGGCTCCCTGCTGCACAGCCTGGTGCTG
CGGGCCCAAGAGTTAGTGCTCCAGTTGCATGCACTGCAGCTGGACCGCCAGGAGTTCGTCTGTCTCAAGT
TCCTCATCCTCTTCAGCCTCGATGTGAAATTCCTGAACAACCACAGCCTCGTAAAGGACGCCCAGGAAAA
GGCCAACGCTGCCCTGTTGGATTACACCTTGTGTCACTACCCACACTGCGGGGACAAATTCCAGCAGTTG
CTATTGTGCCTGGTGGAGGTGCGGGCCCTGAGCATGCAGGCCAAGGAGTACCTGTACCACAAGCATTTGG
GCAACGAGATGCCCCGCAACAACCTTCTCATTGAGATGCTGCAGGCCAAGCAGACTTGA

Translation (462 aa):
MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRF
QKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPPPDYML
PPSLHAPEPKALVSGPPSGPLGDFGAPSLPMAVPGPHGPLAGYLYPAFSNRTIKSEYPEPYASPPQQPGP
PYSYPEPFSGGPNVPELILQLLQLEPEEDQVRARIVGCLQEPAKSRSDQPAPFSLLCRMADQTFISIVDW
ARRCMVFKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLHSLVL
RAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYPHCGDKFQQL
LLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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