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Report for CCDS35794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35794.1 Public Mus musculus 1 Ifi202b 23 108 98 CCDS HistoryNCBI Gene:26388Re-query CCDS DB by CCDS ID:35794.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000266.8 ENSMUSP00000000266.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000266.8Link to Ensembl Protein Viewer:ENSMUSP00000000266.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000266Re-query CCDS DB by Protein ID:ENSMUSP00000000266
Original member Current member NCBI NM_008327.2 NP_032353.2 Accepted alive Link to Nucleotide Sequence:NM_008327.2Link to Protein Sequence:NP_032353.2Re-query CCDS DB by Nucleotide ID:NM_008327Re-query CCDS DB by Protein ID:NP_032353Link to BLAST:NP_032353.2
Original member Current member NCBI NM_011940.2 NP_036070.2 Accepted alive Link to Nucleotide Sequence:NM_011940.2Link to Protein Sequence:NP_036070.2Re-query CCDS DB by Nucleotide ID:NM_011940Re-query CCDS DB by Protein ID:NP_036070Link to BLAST:NP_036070.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032353.2 445 Q9R002 445 100% 0 0
NP_036070.2 445 Q9R002 445 100% 0 0

Chromosomal Locations for CCDS 35794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173962803 173962823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173963794 173963982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173971353 173971757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173972191 173972379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173974733 173975146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173977265 173977384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGTCCAACCGTAACTTAAGGTCATCTACCAACTCAGAATTTTCTGAGGGTCAACATCAGACCCCTTCCA
GTGATTCATCTGGCCATGGGGAGGATCAACCTCAAGCCTCTCCTGGACCTAACAAAAAGTCACACACCCC
AAAAAAGAACATTAGCAAAGGTGCTGTTCTTCATGAGAAACCCATGACAGTGATGGTACTCACTGCAACA
GAACCATTTAATTATAAAGAGGGAAAAGAGAACATGTTTCATGCTACAGTGGCTACAGAGAGCCAATATT
ACCGTGTGAAAGTTTTCAACATGGACTTGAAAGAGAAGTTCACAGAAAATAAATTTATTACCATTTCCAA
ATACTTCAACAGCAGTGGCATCCTAGAGATCAATGAAACTGCCACTGTGTCAGAGGCTGCTCCTAACCAA
ATTATTGAAGTGCCCAAAAATATTATCAGAAGTGCAAAAGAAACTCTTAAGATCTCTAAAATTAAAGAAC
TTGATTCTGGAACACTGATTTATGGTGTGTTTGCAGTAGAGAAGAAAAAAGTGAATGATAAAAGTATAAC
CTTCAAAATAAAAGATAATGAAGATAATATAAAAGTGGTGTGGGATAAAAAACAGCACAATATCAACTAT
GAGAAAGGAGATAAACTCCAACTCTTCTCCTTTCACCTGAGAAAAGGAAATGGGAAACCAATATTACACT
CTGGAAATCACAGTTTCATCAAGGGAGAAAAGCTACTAAAAGAATCTTTTGAAGGGGATGGTTACCACAA
AGGTCCCAAACAAGTGGTGGCATTGAAAGCAACAAAACTATTTACTTATGATAGTATAAAAAGTAAAAAG
ATGTTCCATGCCACAGTGGCTACTGATACAGAATTCTTCAGAGTGATGGTCTTCGAGGAAAACCTAGAGA
AAAAGTTTATCCCGGGAAACACCATTGCTTTATCAGATTATTTTGGTATGTATGGGTCTCTGGCAATACA
TGAATATTCCAGCGTGTCTGAGGTGAAGAGCCAAAATAAGGAAGACTCAAGTTCATCAGATGAAAGACTC
ATAGAACATCTTAAAATTTGTGATCTTCACTTGCAAACAAAAGAAAGGCTGGTTGATGGAGAGTTTAAAG
TATACAGGAAAAGTACCGGAAATAATTGTATATGCTATGGAATTTGGGATGATACAGGAGCAATGAAAGT
GGTGGTATCTGGACAACTGACCAGTGTCAACTGTGAGATTGGTAATACAATTAGACTTGTCTGCTTTGAA
TTGACCTCAAATGCAGATGAGTGGTTTCTGAGATCTACGAGGTACAGTTACATGGAGGTCATCATGCCTG
AAAAATGA

Translation (445 aa):
MSNRNLRSSTNSEFSEGQHQTPSSDSSGHGEDQPQASPGPNKKSHTPKKNISKGAVLHEKPMTVMVLTAT
EPFNYKEGKENMFHATVATESQYYRVKVFNMDLKEKFTENKFITISKYFNSSGILEINETATVSEAAPNQ
IIEVPKNIIRSAKETLKISKIKELDSGTLIYGVFAVEKKKVNDKSITFKIKDNEDNIKVVWDKKQHNINY
EKGDKLQLFSFHLRKGNGKPILHSGNHSFIKGEKLLKESFEGDGYHKGPKQVVALKATKLFTYDSIKSKK
MFHATVATDTEFFRVMVFEENLEKKFIPGNTIALSDYFGMYGSLAIHEYSSVSEVKSQNKEDSSSSDERL
IEHLKICDLHLQTKERLVDGEFKVYRKSTGNNCICYGIWDDTGAMKVVVSGQLTSVNCEIGNTIRLVCFE
LTSNADEWFLRSTRYSYMEVIMPEK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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