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Report for CCDS431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
431.1 Public Homo sapiens 1 MYCBP 24 110 108 CCDS HistoryNCBI Gene:26292Re-query CCDS DB by CCDS ID:431.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 431.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397572.5 ENSP00000380702.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397572.5Link to Ensembl Protein Viewer:ENSP00000380702.2Re-query CCDS DB by Nucleotide ID:ENST00000397572Re-query CCDS DB by Protein ID:ENSP00000380702
Original member Current member NCBI NM_012333.5 NP_036465.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012333.5Link to Protein Sequence:NP_036465.2Re-query CCDS DB by Nucleotide ID:NM_012333Re-query CCDS DB by Protein ID:NP_036465Link to BLAST:NP_036465.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036465.2 103 Q99417 103 100% 0 0

Chromosomal Locations for CCDS 431.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 38864670 38864714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38866880 38867009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38867562 38867610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38873018 38873090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38873291 38873305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGGCCCATTACAAAGCCGCCGACTCGAAGCGTGAGCAGTTCCGGAGGTACTTGGAGAAGTCGGGGGTGC
TGGACACGCTGACCAAGGTGTTGGTAGCCTTATATGAAGAACCAGAGAAACCTAACAGTGCTTTGGATTT
TTTAAAGCATCACTTAGGAGCTGCTACTCCAGAAAATCCAGAAATAGAGCTGCTTCGCCTAGAACTGGCC
GAAATGAAAGAGAAGTATGAAGCTATTGTAGAAGAAAATAAAAAACTGAAAGCAAAGCTTGCTCAGTATG
AACCACCTCAGGAGGAGAAGCGTGCTGAATAG

Translation (103 aa):
MAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELA
EMKEKYEAIVEENKKLKAKLAQYEPPQEEKRAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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