NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30194.1 Public Mus musculus X Xlr5a 23 108 98 CCDS HistoryNCBI Gene:574438Re-query CCDS DB by CCDS ID:30194.1Re-query CCDS DB by GeneID:574438See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078574.11 ENSMUSP00000077650.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078574.11Link to Ensembl Protein Viewer:ENSMUSP00000077650.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078574Re-query CCDS DB by Protein ID:ENSMUSP00000077650
Original member Current member EBI ENSMUST00000114520.1 ENSMUSP00000110166.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114520.1Link to Ensembl Protein Viewer:ENSMUSP00000110166.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114520Re-query CCDS DB by Protein ID:ENSMUSP00000110166
Original member Current member EBI ENSMUST00000179600.7 ENSMUSP00000137006.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179600.7Link to Ensembl Protein Viewer:ENSMUSP00000137006.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179600Re-query CCDS DB by Protein ID:ENSMUSP00000137006
Original member Current member NCBI NM_001045539.2 NP_001039004.2 Accepted alive Link to Nucleotide Sequence:NM_001045539.2Link to Protein Sequence:NP_001039004.2Re-query CCDS DB by Nucleotide ID:NM_001045539Re-query CCDS DB by Protein ID:NP_001039004Link to BLAST:NP_001039004.2

Chromosomal Locations for CCDS 30194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73108442 73108516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73108613 73108717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73109929 73110027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73111415 73111514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73112191 73112311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73113345 73113379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73114547 73114616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73115135 73115240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGTCAAACAAGGAACAAAAGGCCATGAAGAAAAGTGGCAAGCACCAGAGGGTACATAAGACCCTCCCAT
CAGATGACTTCAAGAACTCAGATGAAGTTAACCCTGCTGACAAACCAGCAGTTGGTACCAGTGGGATGGG
CAGCCATTCTTCAGGATCAGACATGCAAGAGGCCAGGGAGCCTGTTCAGAAGAAGATGCAGGATTTCAAA
GGTGATGATGGTACAGGACTTCTTATGGAAAAGAAGAAGCAGTTTGAAGAGGATGTAAATGCCTCTTTCA
GAAGTCTGAATGAAAACCTCCAGAGCATTTTGAAAGCTCAGCAGAATTCAAGGCAGGAGCTTAAGTCTCT
GTACTGTGAAAGATTTGGGTCGGTGTACCACAATTGGCTGGTTGAGATGGACAGAACAAGGGACCAAGAA
GAATACTTCAGTTTTATAACCCAGCAGCAAATGAAGATTTTACAGACGGCTATAGAGGACCATGAAACCA
AGCTCAAAAACGCTAAAGATATGTGTGACACATTTTTGAAGAAAGCCAACGACTTGAGTAAACGTCAAAA
AACCTTTATTGGTGGTCAGCACACTATTGTGGAGAAGGAAATCTCCAAGGTGCAGAACAGAGTAATCATG
GAAACCCAAGATCAAGACATATCCATGGTTGAAACATACCTTCAGTCCCTGATCCATGAAAGCTCTGAAG
AAACCATCTGA

Translation (236 aa):
MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFK
GDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQE
EYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIM
ETQDQDISMVETYLQSLIHESSEETI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH