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Report for CCDS55155.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55155.1 Public Homo sapiens 7 MDFIC 24 110 108 CCDS HistoryNCBI Gene:29969Re-query CCDS DB by CCDS ID:55155.1Re-query CCDS DB by GeneID:29969See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55155.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393486.6 ENSP00000377126.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393486.6Link to Ensembl Protein Viewer:ENSP00000377126.1Re-query CCDS DB by Nucleotide ID:ENST00000393486Re-query CCDS DB by Protein ID:ENSP00000377126
Original member Current member NCBI NM_001166345.3 NP_001159817.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001166345.3Link to Protein Sequence:NP_001159817.1Re-query CCDS DB by Nucleotide ID:NM_001166345Re-query CCDS DB by Protein ID:NP_001159817Link to BLAST:NP_001159817.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159817.1 246 Q9P1T7-2 246 100% 0 0

Chromosomal Locations for CCDS 55155.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 114923034 114923127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114942275 114942397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114979506 114979781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115015688 115015935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGTCCGGCGCGGGCGAAGCCCTCGCTCCCGGGCCCGTGGGGCCGCAGCGCGTGGCCGAGGCGGGCGGCG
GCCAGCTGGGCTCCACAGCCCAGGGAAAATGTGATAAAGACAATACTGAGAAAGATATAACTCAAGCTAC
CAATAGCCACTTCACACATGGAGAGATGCAAGACCAGTCCATTTGGGGAAATCCTTCGGATGGTGAACTC
ATTAGAACCCAACCTCAGCGCTTGCCTCAGCTTCAGACTTCAGCCCAGGTGCCAAGTGGTGAGGAAATAG
GCAAGATAAAGAACGGCCACACAGGTCTGAGCAATGGAAATGGAATTCACCACGGGGCCAAACACGGATC
CGCAGATAATCGCAAACTTTCAGCACCTGTTTCTCAAAAAATGCATAGAAAAATTCAGTCCAGCTTGTCT
GTAAACAGCGATATCAGTAAGAAGAGCAAAGTAAATGCTGTCTTTTCCCAAAAGACAGGCTCTTCACCTG
AAGATTGTTGTGTCCACTGTATCCTGGCTTGCTTGTTCTGCGAATTCCTGACCCTTTGCAACATTGTCCT
GGGACAAGCGTCATGTGGCATCTGCACCTCAGAAGCCTGCTGCTGTTGCTGTGGTGACGAGATGGGGGAT
GATTGTAACTGCCCTTGTGATATGGACTGTGGCATCATGGATGCCTGTTGTGAATCATCAGACTGCTTGG
AAATCTGTATGGAATGCTGTGGAATTTGTTTTCCTTCATAA

Translation (246 aa):
MSGAGEALAPGPVGPQRVAEAGGGQLGSTAQGKCDKDNTEKDITQATNSHFTHGEMQDQSIWGNPSDGEL
IRTQPQRLPQLQTSAQVPSGEEIGKIKNGHTGLSNGNGIHHGAKHGSADNRKLSAPVSQKMHRKIQSSLS
VNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCGDEMGD
DCNCPCDMDCGIMDACCESSDCLEICMECCGICFPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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