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Report for CCDS16688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16688.1 Public Mus musculus 2 Usp50 23 108 98 CCDS HistoryNCBI Gene:75083Re-query CCDS DB by CCDS ID:16688.1Re-query CCDS DB by GeneID:75083See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028842.8 ENSMUSP00000028842.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028842.8Link to Ensembl Protein Viewer:ENSMUSP00000028842.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028842Re-query CCDS DB by Protein ID:ENSMUSP00000028842
Original member Current member NCBI NM_029163.3 NP_083439.2 Accepted alive Link to Nucleotide Sequence:NM_029163.3Link to Protein Sequence:NP_083439.2Re-query CCDS DB by Nucleotide ID:NM_029163Re-query CCDS DB by Protein ID:NP_083439Link to BLAST:NP_083439.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083439.2 390 Q6P8X6-1 390 100% 0 0

Chromosomal Locations for CCDS 16688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 126761452 126761691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126769871 126770003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126775724 126775866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126777899 126778108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126779931 126780126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126780388 126780570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126783220 126783287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGTGCTTCATTGACATGGCGTCTCATCGGCCGGTCCCTGCAGACGACTTCGGTGCCTACTACAACCTTG
CGGAGTGTGCAGACTATGACTCCCTGCCGGAGTCTAAGACCCAGCCACACTTCCAGGGCGTGACGGGACT
GCGGAACCTGGGCAACACCTGCTACATGAACGCCATCTTGCAATGCCTCTGCAGCGTATCTCCACTGGTG
GAGTACTTCCTGTCCGGAAAGTACATCACAGCTCTTAAGAAGGACTGCAGTGAGGTTACCACCGCCTTTG
CCTACCTGATGACAGATATGTGGCTTGGGGACTCAGACTGTGTCTCACCAGAGATATTTCTGTCGGCTGT
TGGCAGTCTTTACCCAGCTTTTCTGAAAAAGACACAGCAAGATGCGCAGGAGTTCCTGATTTACGTCCTC
AACGAGCTTCACGAAGCTTTGAAAAAGCACTGCCGAAGAAGAGTGAATGAGAAAAGAACAGGCCAAAGCT
GCTGCAGGAAGGTGCCGGCCCAGGAGACCTCCATCATCACCCGGCTGTTTGAAGGACAGCTCAGTTACAG
CATCACATGTTTAAAGTGTGAGAGCTGCACGCACAAGAACGAAGTTTTCACCATCCTCTCCCTCCCCATC
CCATCTGACTATGAATGTTCCCTCCAGGACTGTCTCCAGTGTTTTTTCCAACAGGACACACTGACCTGGA
GCAACCAAATCTATTGTTCCTTTTGTGAAATCAAGCAAGAGGCAGCTGTGAGGACCACGATTTCCAAGGT
GCCGAAAATAATTGTTTTTCACTTTAAAAGGTTTGACATCCAGGGCACAGTAAAGAGGAAGCTGCGGACA
GACATCCATTACCCCCTGACCAACCTGGACCTCACTCCTTATATCTGTCCAGTTTTCCGGAAACATCCCA
TGTACAACCTGTGCGCAGTGGTGAACCACTTTGGAGATCTGGATGGTGGTCACTACACTGCTTTCTGCAA
GAACTCGGTAACTCAGGCCTGGTACAGCTTTGATGACACCCGAGTCAGTGAGATCCCAGATACTTCTGTT
CAAACAGCTACAGCCTATCTTCTGTTCTATAGCTGCCAGCCTTTTTCTATACCAGCACAGAAACGCAAGA
GCCAGGACAGTACTCCTGACCACTGCAAGCAAGCTATCCGAAAGTGGCCGTGA

Translation (390 aa):
MCFIDMASHRPVPADDFGAYYNLAECADYDSLPESKTQPHFQGVTGLRNLGNTCYMNAILQCLCSVSPLV
EYFLSGKYITALKKDCSEVTTAFAYLMTDMWLGDSDCVSPEIFLSAVGSLYPAFLKKTQQDAQEFLIYVL
NELHEALKKHCRRRVNEKRTGQSCCRKVPAQETSIITRLFEGQLSYSITCLKCESCTHKNEVFTILSLPI
PSDYECSLQDCLQCFFQQDTLTWSNQIYCSFCEIKQEAAVRTTISKVPKIIVFHFKRFDIQGTVKRKLRT
DIHYPLTNLDLTPYICPVFRKHPMYNLCAVVNHFGDLDGGHYTAFCKNSVTQAWYSFDDTRVSEIPDTSV
QTATAYLLFYSCQPFSIPAQKRKSQDSTPDHCKQAIRKWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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