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Report for CCDS17645.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17645.2 Public Mus musculus 3 Pias3 23 108 98 CCDS HistoryNCBI Gene:229615Re-query CCDS DB by CCDS ID:17645.2Re-query CCDS DB by GeneID:229615See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17645.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 9 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17645.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107077.3 ENSMUSP00000102692.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107077.3Link to Ensembl Protein Viewer:ENSMUSP00000102692.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107077Re-query CCDS DB by Protein ID:ENSMUSP00000102692
Original member Current member NCBI NM_018812.2 NP_061282.2 Accepted alive Link to Nucleotide Sequence:NM_018812.2Link to Protein Sequence:NP_061282.2Re-query CCDS DB by Nucleotide ID:NM_018812Re-query CCDS DB by Protein ID:NP_061282Link to BLAST:NP_061282.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061282.2 593 O54714-3 593 100% 0 0

Chromosomal Locations for CCDS 17645.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96697172 96697195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96699420 96699653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96699759 96699837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96699993 96700077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96700218 96700268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96700489 96700579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96701286 96701420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96701616 96701721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96702174 96702247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96702357 96702517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96703526 96703659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96703739 96703907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96704059 96704192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96704349 96704386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96704849 96705115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGCGGAGCTGGGCGAGTTAAAGCACATGGTGATGAGTTTCCGAGTGTCTGAGCTCCAGGTGCTCCTCG
GCTTCGCTGGCAGGAACAAGAGTGGGCGGAAACACGAGCTGCTGGCCAAGGCCCTGCACCTCCTCAAGTC
TAGCTGCGCCCCCAGCGTCCAGATGAAGATCAAAGAACTTTATCGCAGGCGCTTTCCCCGGAAGACCCTG
GGGCCTTCTGATCTCTCCTTGCTTTCTTTGCCCCCTGGCACCTCTCCTCCTGTGCACCCCGATGTCACCA
TGAAGCCACTGCCCTTCTATGAAGTCTATGGGGAGCTCATCCGACCCACCACCCTTGCGTCCACCTCCAG
CCAGAGGTTCGAGGAAGCCCACTTCACCTTCGCGCTCACTCCCCAGCAGCTGCAGCAGATTCTCACGTCC
AGGGAGGTTCTGCCAGGAGCCAAGTGTGATTACACCATACAAGTGCAGCTCAGATTCTGTCTCTGTGAGA
CCAGCTGCCCTCAGGAGGACTATTTCCCCCCTAACCTCTTTGTTAAGGTTAATGGGAAACTCTGCCCCCT
GCCGGGTTACCTCCCTCCAACCAAGAATGGAGCTGAGCCCAAGAGGCCCAGCCGTCCGATCAACATCACA
CCCTTGGCTCGACTCTCAGCCACTGTCCCCAACACCATCGTAGTTAATTGGTCATCTGAGTTTGGACGGA
ATTACTCCTTGTCCGTGTACCTGGTGAGGCAATTGACTGCAGGGACCCTTCTACAAAAACTCAGAGCCAA
GGGGATCCGGAATCCAGACCATTCCCGGGCACTGATCAAGGAGAAACTGACTGCTGACCCCGACAGTGAA
GTGGCTACTACAAGTCTCCGGGTGTCACTCATGTGCCCGCTAGGGAAGATGCGCCTGACTGTCCCGTGTC
GTGCCCTCACCTGTGCCCATCTGCAGAGTTTCGATGCTGCCCTTTATCTACAGATGAATGAGAAGAAGCC
GACATGGACGTGTCCTGTGTGTGACAAGAAGGCTCCCTATGAGTCGCTGATTATTGATGGTTTATTCATG
GAAATTCTTAATTCCTGTTCGGATTGTGATGAGATCCAGTTCATGGAAGATGGATCCTGGTGTCCGATGA
AACCCAAGAAGGAGGCATCAGAGGTTTGCCCCCCGCCAGGGTATGGGCTGGATGGTCTCCAGTACAGCGC
AGTCCAGGAGGGAATTCAGCCAGAGAGTAAGAAGAGGGTCGAAGTCATTGACTTGACCATCGAAAGCTCA
TCAGATGAGGAGGATTTGCCCCCCACCAAGAAGCACTGCCCTGTCACCTCAGCGGCCATTCCAGCCCTTC
CTGGAAGCAAAGGAGCCCTGACCTCTGGTCACCAGCCATCCTCGGTGCTGCGGAGCCCTGCAATGGGCAC
ACTGGGCAGTGACTTCCTGTCTAGTCTCCCGCTACATGAGTACCCACCTGCCTTCCCACTGGGGGCTGAC
ATCCAAGGTTTAGATTTATTTTCTTTCCTTCAGACTGAGAGTCAGCACTACGGCCCTTCAGTTATCACTT
CGCTAGATGAACAGGACACCCTTGGCCACTTCTTCCAGTACCGGGGAACCCCTTCCCACTTCCTGGGCCC
ACTGGCCCCCACACTGGGGAGCTCTCACCGCAGCTCCACTCCAGCGCCCCCTCCTGGTCGTGTCAGCAGC
ATTGTGGCTCCTGGGAGCTCCTTGAGGGAAGGGCATGGAGGACCCCTGCCTTCAGGTCCCTCTTTGACTG
GCTGTCGGTCAGACGTCATTTCCTTGGACTGA

Translation (593 aa):
MAELGELKHMVMSFRVSELQVLLGFAGRNKSGRKHELLAKALHLLKSSCAPSVQMKIKELYRRRFPRKTL
GPSDLSLLSLPPGTSPPVHPDVTMKPLPFYEVYGELIRPTTLASTSSQRFEEAHFTFALTPQQLQQILTS
REVLPGAKCDYTIQVQLRFCLCETSCPQEDYFPPNLFVKVNGKLCPLPGYLPPTKNGAEPKRPSRPINIT
PLARLSATVPNTIVVNWSSEFGRNYSLSVYLVRQLTAGTLLQKLRAKGIRNPDHSRALIKEKLTADPDSE
VATTSLRVSLMCPLGKMRLTVPCRALTCAHLQSFDAALYLQMNEKKPTWTCPVCDKKAPYESLIIDGLFM
EILNSCSDCDEIQFMEDGSWCPMKPKKEASEVCPPPGYGLDGLQYSAVQEGIQPESKKRVEVIDLTIESS
SDEEDLPPTKKHCPVTSAAIPALPGSKGALTSGHQPSSVLRSPAMGTLGSDFLSSLPLHEYPPAFPLGAD
IQGLDLFSFLQTESQHYGPSVITSLDEQDTLGHFFQYRGTPSHFLGPLAPTLGSSHRSSTPAPPPGRVSS
IVAPGSSLREGHGGPLPSGPSLTGCRSDVISLD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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