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Report for CCDS23071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23071.1 Public Mus musculus 9 Or10g9b 23 108 98 CCDS HistoryNCBI Gene:259110Re-query CCDS DB by CCDS ID:23071.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23071.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073932.3 ENSMUSP00000091386.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073932.3Link to Ensembl Protein Viewer:ENSMUSP00000091386.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000073932Re-query CCDS DB by Protein ID:ENSMUSP00000091386
Original member Current member EBI ENSMUST00000216463.2 ENSMUSP00000150496.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216463.2Link to Ensembl Protein Viewer:ENSMUSP00000150496.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216463Re-query CCDS DB by Protein ID:ENSMUSP00000150496
Original member Current member NCBI NM_147106.2 NP_667317.1 Accepted alive Link to Nucleotide Sequence:NM_147106.2Link to Protein Sequence:NP_667317.1Re-query CCDS DB by Nucleotide ID:NM_147106Re-query CCDS DB by Protein ID:NP_667317Link to BLAST:NP_667317.1

Chromosomal Locations for CCDS 23071.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 40006015 40006947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGTTAAATGGAAGTGTAGTGACCACGTTCTTCCTCTCAGGTCTTCCCCATCCACCAGTCCTGGACTCCA
TGCTCTTTGGGATCTTCCTTGTGATTTATATTCTTACTGTGTTGGGAAACCTTCTCATCCTGATGGTGAT
CAGGGTGGATTCCCACCTCCACACACCAATGTACTACTTCCTCACCAACCTCTCCTTTATTGACATGTGG
TTCTCCACAGTCACAGTGCCTAAAATGCTGATGACTTTGGTGTCCACAGGGGGCGGGGCTATCTCCTTCC
ATAGCTGTGTGGCACAGCTCTATTGCTTCCACTTCCTGGGTAGCACCGAGTGTTTCCTGTACACAGTCAT
GTCCTATGATCGCTACCTGGCCATCAGTTACCCACTCAGGTACAGCAGCATGATGAGTGGGAGAGTGTGT
GCCCTCCTGGCAGCAGGAACATGGATCACTGGTTCCCTGCACTCTGCTGTCCAGACTACACTGATTTTTC
ATTTGCCCTACTGTGGACCCAATGAGATTCAGCATTATTTCTGTGATGGACCACCCATCCTCAAGCTGGC
CTGTGCAGACACATCTGCCATCGAGATGGTCATCTTTGTGAACATTGGGGTAGTGGCTTCGGGCTGCTTT
TTTCTGATTTCGCTGTCCTATGTGTCCATTGTCTGCTCCATCCTGAGGATTCGCACTTCAGAGGGCCGGC
ACAGAGCTTTCCAAACATGTGCCTCACACTGCATCGTGGTCCTCTGTTTCTTTGTGCCCTGTGTTTTCAT
CTACCTGAGGCCAGGCTCCAGGGATGCTGTGGATGGAGTGGTGACAGTTTTCTACACTGTGTTGACACCC
CTACTCAACCCTGTTGTGTACACCCTGAGGAACAAAGAGGTGAAGAAAGCACTGTTTAAACTCAAAGATA
AAGTAGCATTTTCTCAAAGATAG

Translation (310 aa):
MLNGSVVTTFFLSGLPHPPVLDSMLFGIFLVIYILTVLGNLLILMVIRVDSHLHTPMYYFLTNLSFIDMW
FSTVTVPKMLMTLVSTGGGAISFHSCVAQLYCFHFLGSTECFLYTVMSYDRYLAISYPLRYSSMMSGRVC
ALLAAGTWITGSLHSAVQTTLIFHLPYCGPNEIQHYFCDGPPILKLACADTSAIEMVIFVNIGVVASGCF
FLISLSYVSIVCSILRIRTSEGRHRAFQTCASHCIVVLCFFVPCVFIYLRPGSRDAVDGVVTVFYTVLTP
LLNPVVYTLRNKEVKKALFKLKDKVAFSQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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