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Report for CCDS27792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27792.1 Public Mus musculus 15 Or8s2 23 108 98 CCDS HistoryNCBI Gene:259038Re-query CCDS DB by CCDS ID:27792.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27792.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057386.5 ENSMUSP00000051239.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057386.5Link to Ensembl Protein Viewer:ENSMUSP00000051239.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000057386Re-query CCDS DB by Protein ID:ENSMUSP00000051239
Original member Current member EBI ENSMUST00000215830.1 ENSMUSP00000150348.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215830.1Link to Ensembl Protein Viewer:ENSMUSP00000150348.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215830Re-query CCDS DB by Protein ID:ENSMUSP00000150348
Original member Current member NCBI NM_147036.2 NP_667247.1 Accepted alive Link to Nucleotide Sequence:NM_147036.2Link to Protein Sequence:NP_667247.1Re-query CCDS DB by Nucleotide ID:NM_147036Re-query CCDS DB by Protein ID:NP_667247Link to BLAST:NP_667247.1

Chromosomal Locations for CCDS 27792.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98378179 98379108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGAGGAACCACAGCACGGTCCCCGAGTTTATCCTGCTTGGGCTGTCTGCTGATGCCCAGGTCCAGGCTC
TACTCTTTGTGCTTTTCCTGGTGATTTACCTCCTGACCCTCATGGGGAACCTGATGCTGCTGCTGGTGGT
TAAGGTCGATCGCCACCTCCACACACCCATGTACTTCTTCCTGGGACAACTGTCCTTCCTAGACCTCTGC
CACTCCTCCGTCTCAGTGCCCAAGCTGTTGGAGAACCTCCTGTCTGTGAAGAAGACCATCTCAGTGGAGG
GCTGCCTGGCTCAGGTCTTCTTTGTGTTCGCTACTGGAGGCACGGAGTCCTGCCTGCTTGCCGTGATGGC
CTATGACCGCTATGTGGCCATCAGCTCTCCTCTGCTCTACGGTCAAGTGATGAGCAGGCAGCTGTGTGCA
GGGCTGGTGTGGGGCTCGTGGAGCCTGGCTTTTCTGGATGCCTTCATCAATATCCTTGTCGCTTTGAATT
TAGATTTCTGTGAGGCACAGAATATCCACCACTTCATCTGTGAGCTGCCCTCCCTCTATCCTTTGTCTTG
CTCTGATGTGTCTGCGAGCTTTACCACCCTCCTCTGCTCCAGCTTCATCCACTTCTTCGGAAACTTCCTC
CTGATACTCTTGTCATACATTCGCATCCTGCTCACCATCCTGGGGATAAGCTCAGCCTCTGGGAGAAGCA
AGGCCTTTTCTACCTGTTCCTCCCACCTCACGGCCGTCAGCTTCTTTTACGGCTCAGGGTTACTCCGCTA
CCTCATGCCAAATTCCGGATCGACTCAAGAGCTGATCTTCTCTCTACAGTACAGCGTCATCACGCCCATG
CTGAACCCCCTCATCTACAGCCTGAAGAACAAGGAGGTGAAGGCCGCTGTGAGAAGAACGGTCACGAAAT
ATTTGCAGTGTTTCAAATAG

Translation (309 aa):
MRNHSTVPEFILLGLSADAQVQALLFVLFLVIYLLTLMGNLMLLLVVKVDRHLHTPMYFFLGQLSFLDLC
HSSVSVPKLLENLLSVKKTISVEGCLAQVFFVFATGGTESCLLAVMAYDRYVAISSPLLYGQVMSRQLCA
GLVWGSWSLAFLDAFINILVALNLDFCEAQNIHHFICELPSLYPLSCSDVSASFTTLLCSSFIHFFGNFL
LILLSYIRILLTILGISSASGRSKAFSTCSSHLTAVSFFYGSGLLRYLMPNSGSTQELIFSLQYSVITPM
LNPLIYSLKNKEVKAAVRRTVTKYLQCFK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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