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Report for CCDS25020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25020.1 Public Mus musculus 11 Or1e35 23 108 98 CCDS HistoryNCBI Gene:259007Re-query CCDS DB by CCDS ID:25020.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25020.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072991.1 ENSMUSP00000072756.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072991.1Link to Ensembl Protein Viewer:ENSMUSP00000072756.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000072991Re-query CCDS DB by Protein ID:ENSMUSP00000072756
Original member Current member EBI ENSMUST00000215690.1 ENSMUSP00000149064.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215690.1Link to Ensembl Protein Viewer:ENSMUSP00000149064.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215690Re-query CCDS DB by Protein ID:ENSMUSP00000149064
Original member Current member NCBI NM_147005.1 NP_667216.1 Accepted alive Link to Nucleotide Sequence:NM_147005.1Link to Protein Sequence:NP_667216.1Re-query CCDS DB by Nucleotide ID:NM_147005Re-query CCDS DB by Protein ID:NP_667216Link to BLAST:NP_667216.1

Chromosomal Locations for CCDS 25020.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73906552 73907490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCTGGAAAGAACCAAACTCTCATCTTGGAATTCCTCCTCCTGGGTCTGCCCATCTCATCAGAGTATC
ATCTCCTTTTCTATGCCCTGCTCCTGGCCATGTACCTCACCACTCTCCTGGGAAACCTGCTAATCATTCT
CCTTGTTCGACTGGACTCCCATCTCCACACGCCCATGTACTTGTTTCTCAGCAACTTGTCCTTCTCTGAT
CTCTGCTTTTCCTCTGTCACAATACCTAAATTGCTTCAGAACATGCAGAGCCAAGTACCAACGATATCCT
ATGCAGATTGCCTGACACAGCTGTACTTCTTTATGGTTTTTGGAGATATGGAGAGCTTCCTTCTTGTGGT
CATGGCCTATGACCGCTATGTGGCCATCTGCTTTCCTTTGCATTATACCAGCATCATGAGCACCAAATTT
TGTGCTTTACTAGTGCTACTACTGTGGATGCTGACAATATCCCATGCCCTGCTGCATACCCTACTCATGG
CTAGATTGTCTTTTTGTGAGAAGAATGTCATTCTTCACTTTTTCTGTGATATTTCTGCTCTTCTGAAGTT
GTCCTGCTCAGACACTTATGTTAATGAGTTGATGATATTTATCATGGGAGGGATCATCAGTATTATTCCA
TTTCTACTCATTGTTATGTCTTATGTAAGGATTTTTTTCTCCATTCTCAAGGTTCCATCTTCTCAGGACA
TCCACAAGGTCTTCTCTACCTGTGGTTCCCATCTGTCTGTGGTGACCTTGTTTTATGGGACAATTATTGG
TCTCTACTTATGTCCATCAGGCAATAATTCTACTGTGAATGAGATTTCCATGGCCATGATGTACACAGTG
GTGACTCCCATGCTGAACCCCTTCATCTATAGACTGAGGAATAGAGACATGAAGAGGGCCCTAATAAGAG
TTATCTTCAGTAAGAAAATCTCTCTGTAA

Translation (312 aa):
MAGKNQTLILEFLLLGLPISSEYHLLFYALLLAMYLTTLLGNLLIILLVRLDSHLHTPMYLFLSNLSFSD
LCFSSVTIPKLLQNMQSQVPTISYADCLTQLYFFMVFGDMESFLLVVMAYDRYVAICFPLHYTSIMSTKF
CALLVLLLWMLTISHALLHTLLMARLSFCEKNVILHFFCDISALLKLSCSDTYVNELMIFIMGGIISIIP
FLLIVMSYVRIFFSILKVPSSQDIHKVFSTCGSHLSVVTLFYGTIIGLYLCPSGNNSTVNEISMAMMYTV
VTPMLNPFIYRLRNRDMKRALIRVIFSKKISL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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