NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25024.1 Public Mus musculus 11 Or3a4 23 108 98 CCDS HistoryNCBI Gene:259006Re-query CCDS DB by CCDS ID:25024.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25024.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059440.4 ENSMUSP00000056508.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059440.4Link to Ensembl Protein Viewer:ENSMUSP00000056508.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000059440Re-query CCDS DB by Protein ID:ENSMUSP00000056508
Original member Current member EBI ENSMUST00000215915.1 ENSMUSP00000149917.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215915.1Link to Ensembl Protein Viewer:ENSMUSP00000149917.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215915Re-query CCDS DB by Protein ID:ENSMUSP00000149917
Original member Current member NCBI NM_147004.2 NP_667215.2 Accepted alive Link to Nucleotide Sequence:NM_147004.2Link to Protein Sequence:NP_667215.2Re-query CCDS DB by Nucleotide ID:NM_147004Re-query CCDS DB by Protein ID:NP_667215Link to BLAST:NP_667215.2

Chromosomal Locations for CCDS 25024.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74053822 74054757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGATCTGGGAACCTTGGGAAACGATTCCTGTGTGAGCACATTTGTCCTACTGGGTCTCACAGAGACTC
CAGTTTTGCGGCCCATCCTCTTTGTCATCTTCCTTCTTGCTTATGTAGCTACGCTTGGTGGCAATTTCAG
CATCCTGGCTGCTATCATTATAGAGCCCAAACTCCACACTCCCATGTATTTCTTCTTGGGGAACTTGTCT
ATGCTGGATGTTGGATGCATTAGTGTCACTGTTCCTGCCATGTTGAAACATTTTCTATCCAATGACAGAC
ACATTCCCTATGGGGCCTGCCTCTCACAGCTCTTCTTCTTCCATCTCCTGGCTGGGGCAGACTGCTTCCT
TCTGACTGTCATGGCCTATGATCGTTATCTGGCTATCTGCCACCCCCTCACCTACAACACCCATATGAGT
TGGAGGATTCAGAAGGCCTCAGTGTGCCTGTCATGTGTGTTTTCCTTTAGTAATGCACTGACCCAAACTG
TTGCCTTATCTACTCTTAAATTCTGTGGTCCAAACACAATCAACCACTTCTACTGTGACCTCCCTCAGCT
CTTTCAGCTTTCCTGTTCCAGCATCCAACTCAATGAGCAGCTGCTCTTTGTAGCAGCAGCCTTCATGGGT
GTGGTCCCCTTGGTCCTCATTACTGTGTCATATGGCCATGTGGCAGCTGCAGTTCTTCGTATCCGGTCTG
CTGAGGGCAGGAAGAAAGCCTTCTCTACCTGCAGCTCTCATCTCACTGTGGTAGGCATCTTCTATGGGAC
AGGGGTCTTCAGCTACATGCGTCTGGGGTCAGTGGAATCTTCAGACAAGGACAAAGGCATTGGCATCCTC
AACACTGTCATCAGTCCCATGCTGAACCCACTTATCTACAGCCTTAGGAACCCTGATGTGCAGGGTGCCC
TACGGAAGGTGCTCACAGGGAGGTAG

Translation (311 aa):
MDLGTLGNDSCVSTFVLLGLTETPVLRPILFVIFLLAYVATLGGNFSILAAIIIEPKLHTPMYFFLGNLS
MLDVGCISVTVPAMLKHFLSNDRHIPYGACLSQLFFFHLLAGADCFLLTVMAYDRYLAICHPLTYNTHMS
WRIQKASVCLSCVFSFSNALTQTVALSTLKFCGPNTINHFYCDLPQLFQLSCSSIQLNEQLLFVAAAFMG
VVPLVLITVSYGHVAAAVLRIRSAEGRKKAFSTCSSHLTVVGIFYGTGVFSYMRLGSVESSDKDKGIGIL
NTVISPMLNPLIYSLRNPDVQGALRKVLTGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH