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Report for CCDS16408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16408.1 Public Mus musculus 2 Or4b1 23 108 98 CCDS HistoryNCBI Gene:258987Re-query CCDS DB by CCDS ID:16408.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16408.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099754.4 ENSMUSP00000097343.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099754.4Link to Ensembl Protein Viewer:ENSMUSP00000097343.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099754Re-query CCDS DB by Protein ID:ENSMUSP00000097343
Original member Current member EBI ENSMUST00000215975.2 ENSMUSP00000149396.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215975.2Link to Ensembl Protein Viewer:ENSMUSP00000149396.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215975Re-query CCDS DB by Protein ID:ENSMUSP00000149396
Original member Current member EBI ENSMUST00000216354.1 ENSMUSP00000149941.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216354.1Link to Ensembl Protein Viewer:ENSMUSP00000149941.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216354Re-query CCDS DB by Protein ID:ENSMUSP00000149941
Original member Current member EBI ENSMUST00000213946.2 ENSMUSP00000150124.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213946.2Link to Ensembl Protein Viewer:ENSMUSP00000150124.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213946Re-query CCDS DB by Protein ID:ENSMUSP00000150124
Original member Current member EBI ENSMUST00000217139.1 ENSMUSP00000150561.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217139.1Link to Ensembl Protein Viewer:ENSMUSP00000150561.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217139Re-query CCDS DB by Protein ID:ENSMUSP00000150561
Original member Current member EBI ENSMUST00000215578.1 ENSMUSP00000151124.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215578.1Link to Ensembl Protein Viewer:ENSMUSP00000151124.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215578Re-query CCDS DB by Protein ID:ENSMUSP00000151124
Original member Current member NCBI NM_146985.2 NP_667196.1 Accepted alive Link to Nucleotide Sequence:NM_146985.2Link to Protein Sequence:NP_667196.1Re-query CCDS DB by Nucleotide ID:NM_146985Re-query CCDS DB by Protein ID:NP_667196Link to BLAST:NP_667196.1

Chromosomal Locations for CCDS 16408.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 90149090 90150004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGGCCAGGGAAAATAACGTGACTGAATTGATCATCACCGGCCTTTTCCAGGATCCAAATGTGCAGAAGG
TGTGCTTTGTGCTGTTCCTTCCTGTGTACCTGGCCACAGTGTTGGGCAATGGCCTCATTGTTGCAATGGT
CATTGTCAGTAAGAGTCTGCATTCTCCCATGTACATCTTCCTCAGCTCCTTGTCCCTGGTGGAGATCTGT
TACTCTTCTACTGTTGTCCCTAAGTTCATCACTGACTTACTTGCTAAGGTTAAAACCATCTCGCTGAAGG
GCTGTCTGGCTCAGATATTCTTCTTCCATTTCTTGGGAGTGGCTGAGATATTTTTGCTTGTGGTGATGGC
CTATGACCGCTATGTGGCCATCTGCAAACCTCTTCATTACATGAATATCATGAGTCGTCAAGTGTGTCAC
GTGCTGGTGGCTGTTTCTTGGCTGGGGGGCTTTTTACATTCTATAATTCAGGTTCTTATCTCTATTCAGT
TGCCCTTCTGTGGTCCCAATGTGATTGACCACTACTTCTGTGACCTGCAGCCATTATTCAAGCTGGCTTG
CACTGATACATTTGTGGAGAGTGTCATTGTAATGGCCAATAGTGGTTTAATTGCTCTGTGTTCCTTCCTT
GTCTTGGTGTCCTCCTATGTCATCATCCTTGTCAATTTGAGGAAGCATTCTGCAGAGGGGAGACGCAAGG
CCCTCTCCACCTGTGCCTCTCACATCACAGTGGTCGTCTTGTTCTTTGGACCCGCCATCTTCCTCTACAT
GAGACCTTCCTCTACTTTCACTGAAGACAAGCTTGTGGCTGTGTTCTACACGGTCATCACCCCTATGCTG
AATCCCATCATCTACACACTCAGAAATGCAGAGGTGAAAAATGCTGTGAGGAAGTTGTGGGGAAAAAGAA
TATAG

Translation (304 aa):
MARENNVTELIITGLFQDPNVQKVCFVLFLPVYLATVLGNGLIVAMVIVSKSLHSPMYIFLSSLSLVEIC
YSSTVVPKFITDLLAKVKTISLKGCLAQIFFFHFLGVAEIFLLVVMAYDRYVAICKPLHYMNIMSRQVCH
VLVAVSWLGGFLHSIIQVLISIQLPFCGPNVIDHYFCDLQPLFKLACTDTFVESVIVMANSGLIALCSFL
VLVSSYVIILVNLRKHSAEGRRKALSTCASHITVVVLFFGPAIFLYMRPSSTFTEDKLVAVFYTVITPML
NPIIYTLRNAEVKNAVRKLWGKRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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