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Report for CCDS16394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16394.1 Public Mus musculus 2 Or4a47 23 108 98 CCDS HistoryNCBI Gene:258985Re-query CCDS DB by CCDS ID:16394.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16394.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099763.1 ENSMUSP00000097351.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099763.1Link to Ensembl Protein Viewer:ENSMUSP00000097351.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099763Re-query CCDS DB by Protein ID:ENSMUSP00000097351
Original member Current member EBI ENSMUST00000111520.2 ENSMUSP00000107145.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111520.2Link to Ensembl Protein Viewer:ENSMUSP00000107145.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111520Re-query CCDS DB by Protein ID:ENSMUSP00000107145
Original member Current member EBI ENSMUST00000215613.1 ENSMUSP00000149123.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215613.1Link to Ensembl Protein Viewer:ENSMUSP00000149123.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215613Re-query CCDS DB by Protein ID:ENSMUSP00000149123
Original member Current member EBI ENSMUST00000213833.1 ENSMUSP00000150906.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213833.1Link to Ensembl Protein Viewer:ENSMUSP00000150906.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213833Re-query CCDS DB by Protein ID:ENSMUSP00000150906
Original member Current member NCBI NM_146983.1 NP_667194.1 Accepted alive Link to Nucleotide Sequence:NM_146983.1Link to Protein Sequence:NP_667194.1Re-query CCDS DB by Nucleotide ID:NM_146983Re-query CCDS DB by Protein ID:NP_667194Link to BLAST:NP_667194.1

Chromosomal Locations for CCDS 16394.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 89835023 89835943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGAACCAAGGAACAATGTAACCTACTTTGTCCTCTTGGGCCTCTCAGAGAATCCAAAGGTGCAGAAAG
GACTTTTCGTTCTTTTTTTGCTCTCCTATGTTTTGACTATGGTGGGAAATCTGCTCATTGTTATGACTGT
AACTACCAGTAACAGCCTGGGCTCACCAATGTATTTCTTTCTTGCTAGCTTGTCATTTGTGGATATCATT
TATTCTTCAGCCATTTCTCCCAAGTTGATTTCAGATTTGTTCTTTGGTCAAAATACAATATCCTTTAAAT
TTTGTATGACTCAGCTATTCACAGAACACTTTTTTGGTGGATCAGAGGTTTTTCTTCTGCTGGTGATGGC
CTATGATCGTTATGTGGCCATCTGTAAGCCCTTGCACTATTCAACTATCATGAAGCAATGGGTTTGTGTT
GTGCTGTTGATATTATCTTGGATCGGAGGATTTTTGCACTCAGTAATTCAGCTCAGTACTATTTATGGAC
TTCCATTCTGTGGTCCTAATATCATTGATCATTTTATGTGTGACATGTACCCCTTACTGAAACTTGTTTG
TATTGACACCTATGTCATTGGCCTCTTAGTGATGGCCAATGGAGGGCTGATCTGCACGGTTGTGTTTATA
CTCCTGCTCATCTCTTATGGTGTCATCCTGTACTCTCTAAAGAACCTTAATCAGGAAGGGAGGTGGAAAG
CTCTCTCTACCTGTGGCTCCCACATCACTGTAGTTGTTTCATTCTTTGTTCCCTGTATTTTCATGTATGC
ACGACCTGCTAAGACTTTCCCCATTGACAAAATGTTGAGTGTGTTTTATACAGTCATTACCCCCATGATG
AACCCCTTGATATATACTCTGAGAAACTCAGAGATGACAAATGCTATGAAGAAGCTGTGGAGAAGGAAAA
TTATTTCATGA

Translation (306 aa):
MEPRNNVTYFVLLGLSENPKVQKGLFVLFLLSYVLTMVGNLLIVMTVTTSNSLGSPMYFFLASLSFVDII
YSSAISPKLISDLFFGQNTISFKFCMTQLFTEHFFGGSEVFLLLVMAYDRYVAICKPLHYSTIMKQWVCV
VLLILSWIGGFLHSVIQLSTIYGLPFCGPNIIDHFMCDMYPLLKLVCIDTYVIGLLVMANGGLICTVVFI
LLLISYGVILYSLKNLNQEGRWKALSTCGSHITVVVSFFVPCIFMYARPAKTFPIDKMLSVFYTVITPMM
NPLIYTLRNSEMTNAMKKLWRRKIIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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