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Report for CCDS25008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25008.1 Public Mus musculus 11 Or1e16 23 108 98 CCDS HistoryNCBI Gene:258923Re-query CCDS DB by CCDS ID:25008.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120303.8 ENSMUSP00000113707.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120303.8Link to Ensembl Protein Viewer:ENSMUSP00000113707.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120303Re-query CCDS DB by Protein ID:ENSMUSP00000113707
Original member Current member NCBI NM_146921.2 NP_667132.1 Accepted alive Link to Nucleotide Sequence:NM_146921.2Link to Protein Sequence:NP_667132.1Re-query CCDS DB by Nucleotide ID:NM_146921Re-query CCDS DB by Protein ID:NP_667132Link to BLAST:NP_667132.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_667132.1 314 Q8VGI1 314 100% 0 0

Chromosomal Locations for CCDS 25008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73395076 73396020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGACAGAAAGGAACAAAACTGTCATCTCCCAGTTCCTCCTCCTGGGCCTACCCATTCCACCAGAGCACC
AGCAACTGTTCTATGCCCTGTTCCTGGTCATGTACCTCACCACCGTCCTGGGGAACCTCATCATCATCAT
TCTCATAATACTGGACTCCCATCTCCACACACCCATGTACTTGTTTCTCAGCAACTTGTCCTTCTCTGAC
CTTTGTTTCTCCTCTGTCACAATGCCCAAGTTGCTGCAGAACATGCAGAGCCAAGTTCCATCGATTCCCT
ATGCAGGTTGCCTGGCACAAATATACTTCTTTCTGTTTTTTGGAGACCTTGGGAACTTTCTCCTTGTGGC
CATGGCCTACGACCGCTATGTGGCCATCTGTTACCCCCTTCATTACACCACCATCATGAGCCCCAGGCTC
TGTGTGAGTCTAGTGGTGCTGTCCTGGGTGCTGACCACCTTCCATGCCATGCTGCACACCCTGCTTATGG
CCAGATTGTCATTCTGTGAGGACAATGTGATCCCTCACTATTTCTGTGATATGTCTGCTCTGCTAAAGCT
GGCCTGCTCTGACACCCGTGTTAATGAGGTGGTGATATTTATTGTGGCCAGCATCTTTCTTGTCCTTCCA
TTTGCACTCATTACCATGTCCTATGTAAGAATTGTGTCTTCCATTCTCAAGGTCCCTTCTTCTCAAGGTA
TCTACAAAGCCTTCTCCACATGTGGATCTCACCTGTCTGTAGTGTCACTGTTCTATGGGACAGTCATTGG
TCTCTACTTATCTCCTTCCAGTAATAATTCTACTGTGAAGGATACTGTCATGTCTTTAATGTACACAGTG
GTGACTCCCATGCTGAACCCCTTTATCTACAGCCTGAGGAACAGAGACATAAAGGGGGCTCTGGAAAGAG
TCTTTTGCAAAAGGAAAATTCAACTAAACCTATAA

Translation (314 aa):
MTERNKTVISQFLLLGLPIPPEHQQLFYALFLVMYLTTVLGNLIIIILIILDSHLHTPMYLFLSNLSFSD
LCFSSVTMPKLLQNMQSQVPSIPYAGCLAQIYFFLFFGDLGNFLLVAMAYDRYVAICYPLHYTTIMSPRL
CVSLVVLSWVLTTFHAMLHTLLMARLSFCEDNVIPHYFCDMSALLKLACSDTRVNEVVIFIVASIFLVLP
FALITMSYVRIVSSILKVPSSQGIYKAFSTCGSHLSVVSLFYGTVIGLYLSPSSNNSTVKDTVMSLMYTV
VTPMLNPFIYSLRNRDIKGALERVFCKRKIQLNL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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