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Report for CCDS22860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22860.1 Public Mus musculus 9 Or7g33 23 108 98 CCDS HistoryNCBI Gene:258908Re-query CCDS DB by CCDS ID:22860.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058296.3 ENSMUSP00000053262.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058296.3Link to Ensembl Protein Viewer:ENSMUSP00000053262.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000058296Re-query CCDS DB by Protein ID:ENSMUSP00000053262
Original member Current member EBI ENSMUST00000213834.1 ENSMUSP00000150773.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213834.1Link to Ensembl Protein Viewer:ENSMUSP00000150773.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213834Re-query CCDS DB by Protein ID:ENSMUSP00000150773
Original member Current member NCBI NM_146906.1 NP_667117.1 Accepted alive Link to Nucleotide Sequence:NM_146906.1Link to Protein Sequence:NP_667117.1Re-query CCDS DB by Nucleotide ID:NM_146906Re-query CCDS DB by Protein ID:NP_667117Link to BLAST:NP_667117.1

Chromosomal Locations for CCDS 22860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 19537011 19537928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGAATTAGAAAACCAGACAAGAGTAATAGAATTCTTTCTCTTGGGCCTCTCAGAGGATCCAGAACTTC
AGCCCATCCTCTTTGGACTGTTCCTGCTTATGTACCTAGTGACAGTCTCTGGGAACCTGCTCATCATCCT
GGCCATTGTCTCTGACGCTCACCTCCACACTCCAATGTACTTCTTCCTCTCAAACCTGTCCTTCACTGAT
ATCTGCTTCAGCACCACCACTGTTCCTAAGATGCTGACAAACCTTCAGAAACAGAGCAAATCCATCAGTT
ACACAGGCTGCATTACCCAGCTTAGCTTTGTCCTACTTTTTGCTGGAATGGAAAACTTTCTTCTTGCAGC
AATGGCTTATGACCGTTATGTGGCCATCTGCAATCCCCTTCGCTACACAGACATCATGAAACTCCATTTG
TGTTTTGTGATGATTTTTTTGTCTTTGTACATTAGCATTGTGGATGCCCTTCTACATGGCTTAATGACAT
TGCGTCTATCTTTCTGCACATTTCTTGAAATTCCCCACTTCTTCTGTGAACTTTATCAGGTTATCAAGAT
TGCATGTTCTGACACTCTCATCAATAACATTTTGATATATGTCATGAGTAGTGCATTAGGTGGTATGCCC
CTAGTAGGGATTATTTTCTCTTACTATAAAATTATCTCTTCCATCCTCAGAATGCCATCACCAGGCGGTA
GGCATAAGGCTTTTTCAACATGTGGATCTCATCTGTCAGTGGTTTCCTTGTTCTATGGGACAGCTTTTGG
GGTATACATTAGTTCTGCATTTACAGAGTCATACAGGAGAACTTCTGTAGCATCATTGATGTATACTGTG
TTTCCGCCTATGCTGAACCCATTTATCTATAGTCTGAGGAACAAAGATATGAAGAAAGCTTTGAGAAAAA
TAGTCTGA

Translation (305 aa):
MELENQTRVIEFFLLGLSEDPELQPILFGLFLLMYLVTVSGNLLIILAIVSDAHLHTPMYFFLSNLSFTD
ICFSTTTVPKMLTNLQKQSKSISYTGCITQLSFVLLFAGMENFLLAAMAYDRYVAICNPLRYTDIMKLHL
CFVMIFLSLYISIVDALLHGLMTLRLSFCTFLEIPHFFCELYQVIKIACSDTLINNILIYVMSSALGGMP
LVGIIFSYYKIISSILRMPSPGGRHKAFSTCGSHLSVVSLFYGTAFGVYISSAFTESYRRTSVASLMYTV
FPPMLNPFIYSLRNKDMKKALRKIV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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