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Report for CCDS23003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23003.1 Public Mus musculus 9 Or8c17 23 108 98 CCDS HistoryNCBI Gene:258875Re-query CCDS DB by CCDS ID:23003.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23003.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093864.1 ENSMUSP00000091387.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093864.1Link to Ensembl Protein Viewer:ENSMUSP00000091387.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000093864Re-query CCDS DB by Protein ID:ENSMUSP00000091387
Original member Current member NCBI NM_146875.2 NP_667086.2 Accepted alive Link to Nucleotide Sequence:NM_146875.2Link to Protein Sequence:NP_667086.2Re-query CCDS DB by Nucleotide ID:NM_146875Re-query CCDS DB by Protein ID:NP_667086Link to BLAST:NP_667086.2

Chromosomal Locations for CCDS 23003.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38268515 38269465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGTCACTCAATGCACAAAAGACTATGGAAAATGATTCTTCTGTGTCTGAGTTTATTCTTATGGGACTGA
CAGACCAACCTGAGCTCCAGCTGCCCTTATTTGTTCTGTTCTTGGTGAACTACACAGTCACTGTGATGGG
AAATTTGAGCTTAATGAATCTCATTTGCCTAAACTCAAACCTTCACACCCCCATGTACTTTTTCATCTTC
AACCTGTCCTTCATTGACTTCTGTTATTCAATGGTCTTTACCCCCAAAATGCTGATGGGCTTTGTTGTAG
AGAAGAACATCATCTCCTTCAGAGGATGCATGACTCAGCTGTTTTTCTTCTTATTTTTTGTGAACTCTGA
GAGTTATGTGCTGACAGCAATGGCCTATGATCGCTATGTGGCCATCTGTCAGCCACTGCTCTACAAAGCT
GTTATGTCACCTGGCATCTGCTTTCTATTGATATTTTGTACTTATTTGATGGGGCTTGTTAGTGCCTTAT
TCCATACAGGTTTTATGATAAGGCTCAACTTTTGTGATTCTAATGTTATCAACCACTATATGTGTGATAT
CTTCCCTCTCTTTCGGCTCTCCTGCAGTAGCACCTATCTCACTGAGCTTGTGAGCTCTGCTGTGGTGGGT
ACAGCTATTATCTTATGTTGCCTCATTATCTTAATCTCTTATGGTATGATCCTTTACAATATCATTCATA
TGTCATCAGGTAAGGGTTGGTCCAAAGCCTTGGGCACTTGTGGTTCTCACATTATAACTGTTAGCTTGTT
CTATGTAACTGGGATGCTTGCTTATGTCAAGCCATCATCTGCTGAGACTGTGGGACAGGGGAAAATTTTC
TCAGTATTTTACACTTTTTTGGTGCCCATGCTGAATCCTCTTATTTACAGCCTCAGAAACAAGGATGTCA
AACTTGCTGTGAAAAAAACCTGGAAGAGACTCACATGTTAA

Translation (316 aa):
MSLNAQKTMENDSSVSEFILMGLTDQPELQLPLFVLFLVNYTVTVMGNLSLMNLICLNSNLHTPMYFFIF
NLSFIDFCYSMVFTPKMLMGFVVEKNIISFRGCMTQLFFFLFFVNSESYVLTAMAYDRYVAICQPLLYKA
VMSPGICFLLIFCTYLMGLVSALFHTGFMIRLNFCDSNVINHYMCDIFPLFRLSCSSTYLTELVSSAVVG
TAIILCCLIILISYGMILYNIIHMSSGKGWSKALGTCGSHIITVSLFYVTGMLAYVKPSSAETVGQGKIF
SVFYTFLVPMLNPLIYSLRNKDVKLAVKKTWKRLTC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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