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Report for CCDS28776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28776.1 Public Mus musculus 17 Or2n1b 23 108 98 CCDS HistoryNCBI Gene:258828Re-query CCDS DB by CCDS ID:28776.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113636.1 ENSMUSP00000109266.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113636.1Link to Ensembl Protein Viewer:ENSMUSP00000109266.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113636Re-query CCDS DB by Protein ID:ENSMUSP00000109266
Original member Current member EBI ENSMUST00000215078.2 ENSMUSP00000149451.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215078.2Link to Ensembl Protein Viewer:ENSMUSP00000149451.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000215078Re-query CCDS DB by Protein ID:ENSMUSP00000149451
Original member Current member EBI ENSMUST00000215549.2 ENSMUSP00000150597.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215549.2Link to Ensembl Protein Viewer:ENSMUSP00000150597.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000215549Re-query CCDS DB by Protein ID:ENSMUSP00000150597
Original member Current member NCBI NM_146831.1 NP_667042.1 Accepted alive Link to Nucleotide Sequence:NM_146831.1Link to Protein Sequence:NP_667042.1Re-query CCDS DB by Nucleotide ID:NM_146831Re-query CCDS DB by Protein ID:NP_667042Link to BLAST:NP_667042.1

Chromosomal Locations for CCDS 28776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38148590 38149528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATATTGATCAATAAAAGTCACCCAGAAGAGTTTATTCTACTTGGTTTTGCAGACCGTCCTTGGCTGG
AACTTCCTCTCTTTATTATTCTTCTGGTAACATACCCCACAGCCATGATTGGAAACATTGCCATCATTCT
CGTGTCTATATTAGACCCCTGTCTCCATAGCCCTATGTATTTCTTCCTCACCAACCTCTCCTTTCTGGAC
ATGTGCTACACCACAAGCATTGTACCTCAGATGTTAATTAACCTTTGGGGCTCTACAAAGACCATCAGCT
ACATGAGGTGTGCAGTTCAGCTTTATTTCTTCCACACAATGGGGGGTACAGAGTGTGTCCTCCTGGCTCT
TATGTCCTTTGACCGATATGTGGCCATCTGCAAACCCCTGCACTATACCCTCATAATGAATCAGCGCAAC
TGTGTCCTGTTAGTGTCCACTGTGTGGCTGACTGGAATTTTCTATGCTGTCTCAGAGGCCACTGTAACAC
TGCAATTGCCTCTTTGTGGCCACAATAAAATGGATCATTTGGTGTGTGAGATTCCAATTCTGATAAAAAC
TGCTTGTGGTGAAAAAGAGACTAATGAGCTTGCTCTCTCAGTAGTATGCATTTTTCTTTTAGCTATTCCT
CTGTGTTTAATTCTTGCCTCCTATGCTAGTATTGGACATGCTGTCTTTAAAATCAAATCTTCAGAGGGAA
GAAAAAAGGCCTTTGGGACATGTTCCTCTCATCTCATTGTAGTTCTCTTGTTCTATGGTCCAGCCATTAG
TATGTATCTTCAGCCTCCTTCCTCTATTACAAAAGACCAACCTAAGTTCATGGCTCTCTTCTATGGAGTA
GTAACTCCTACATTGAACCCCTTCATCTATACCCTGAGGAATAAGGATGTAAAGGGGGCATTAGGTAAAC
TATTCAGGAACATTTTTATATCAAAGTAA

Translation (312 aa):
MILINKSHPEEFILLGFADRPWLELPLFIILLVTYPTAMIGNIAIILVSILDPCLHSPMYFFLTNLSFLD
MCYTTSIVPQMLINLWGSTKTISYMRCAVQLYFFHTMGGTECVLLALMSFDRYVAICKPLHYTLIMNQRN
CVLLVSTVWLTGIFYAVSEATVTLQLPLCGHNKMDHLVCEIPILIKTACGEKETNELALSVVCIFLLAIP
LCLILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVLLFYGPAISMYLQPPSSITKDQPKFMALFYGV
VTPTLNPFIYTLRNKDVKGALGKLFRNIFISK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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