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Report for CCDS15538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15538.1 Public Mus musculus 1 Or6k4 23 108 98 CCDS HistoryNCBI Gene:258716Re-query CCDS DB by CCDS ID:15538.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053941.3 ENSMUSP00000054305.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053941.3Link to Ensembl Protein Viewer:ENSMUSP00000054305.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000053941Re-query CCDS DB by Protein ID:ENSMUSP00000054305
Original member Current member EBI ENSMUST00000214751.1 ENSMUSP00000150840.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214751.1Link to Ensembl Protein Viewer:ENSMUSP00000150840.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214751Re-query CCDS DB by Protein ID:ENSMUSP00000150840
Original member Current member NCBI NM_146721.2 NP_666932.2 Accepted alive Link to Nucleotide Sequence:NM_146721.2Link to Protein Sequence:NP_666932.2Re-query CCDS DB by Nucleotide ID:NM_146721Re-query CCDS DB by Protein ID:NP_666932Link to BLAST:NP_666932.2

Chromosomal Locations for CCDS 15538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 174136746 174137693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGAGAATTAACAGAACCACTTCAGTGACAGAATTCCTCTTCTCTGGATTTCCCCAGTTTGAAGATGGAA
GTTTCCTCTTCTTCATTCCTTTGTTCTTCATTTACATATTCATTGTTATTGGAAATCTCATTGTGTTTTT
TGCAGTCAGGATGGATACCCGTCTTCACAACCCCATGTACAATTTTATCAGCATTTTCTCATTTCTGGAG
ATTTGGTATACCACTGCAACTATTCCCAAAATGCTCTCCAATCTCATCAGTAAGCAAAGGACCATCTCTT
TGATTGGATGCCTGCTACAGATGTACTTCTTCCATTCACTTGGAAATTCAGAGGGTATTTTACTGACAAC
AATGGCTATTGACAGGTATGTTGCCATCTGTAATCCTCTCCGGTACCCAACTATCATGACTCCCCGGCTC
TGTGCTCACCTCTCTGCAGGTTCCTGCATCTTTGGCTTTCTTGTGTTGCTTCCAGAGATTGCTTGGATTT
CCACACTGCCCTTCTGTGGCCCCAACCAAATTCATCAGATCTTCTGTGACTTTGAACCTGTGTTGCGTTT
GGCATGTACGGACACCTCCATGATTCTGGTTGAAGATGTGGTTCATGCAGTGGCCATCATCTTCTCTGTG
TTGGTTATTGCCATCTCTTACATGAGAATCATCACCGTGATCCTGAGGATCCCCTCTGGTGAAGGCCGTC
GGAAGGCTTTCTCTACTTGTGCTGCCCATCTTGGTGTCTTCTTGATGTTCTATGGCAGTGTCTCCCTCAT
GTATCTGCGTTTCTCAGCTACTTTCCCACCAATTTTAGACACAGCTATTGCACTAATGTTTGCAGTTCTT
GCACCCTTTTTCAACCCTATCATCTATAGTCTGAGAAATAAGGATATGAAGATAGCAATTAAGAAGCTAC
TCTGCTCTCAGAAGATGCTGCCTACATCTGCAAGCTAA

Translation (315 aa):
MRINRTTSVTEFLFSGFPQFEDGSFLFFIPLFFIYIFIVIGNLIVFFAVRMDTRLHNPMYNFISIFSFLE
IWYTTATIPKMLSNLISKQRTISLIGCLLQMYFFHSLGNSEGILLTTMAIDRYVAICNPLRYPTIMTPRL
CAHLSAGSCIFGFLVLLPEIAWISTLPFCGPNQIHQIFCDFEPVLRLACTDTSMILVEDVVHAVAIIFSV
LVIAISYMRIITVILRIPSGEGRRKAFSTCAAHLGVFLMFYGSVSLMYLRFSATFPPILDTAIALMFAVL
APFFNPIIYSLRNKDMKIAIKKLLCSQKMLPTSAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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