NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29648.1 Public Mus musculus 19 Or5b101 23 108 98 CCDS HistoryNCBI Gene:258695Re-query CCDS DB by CCDS ID:29648.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29648.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087773.1 ENSMUSP00000085071.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087773.1Link to Ensembl Protein Viewer:ENSMUSP00000085071.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000087773Re-query CCDS DB by Protein ID:ENSMUSP00000085071
Original member Current member NCBI NM_146700.1 NP_666911.1 Accepted alive Link to Nucleotide Sequence:NM_146700.1Link to Protein Sequence:NP_666911.1Re-query CCDS DB by Nucleotide ID:NM_146700Re-query CCDS DB by Protein ID:NP_666911Link to BLAST:NP_666911.1

Chromosomal Locations for CCDS 29648.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13027404 13028327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGAGAACAGAACAGAAGTGAGATGCTTCATCCTGGTGGGACTCACCAATGACCCAAGCCTGCAGCTTC
CACTCTCTATCACGTTCCTCCTCATCTATATCATCACCCTTATAGGAAATCTTGGGCTGATCTTGATGAT
TCTCTTGGATTCTCGGCTCCACACTCCCATGTACATTTTCCTAGGTAACCTGTCTTTAGTGGACTTTTGT
TATTCTTCAACAGTAACTCCAAAGGTCATAGCTGGATTCCTTACAGGAGACAAGATCATGTCTTACAATG
CTTGTGCCTCTCAGATGTTCTTTTTTGCAAACTTTGGAGATGTGGAAAACTACCTTTTAGCCTCAATGGC
CTATGATCGTTATGTAGCAGTGTGTAAGCCCCTACATTATGCTACCACCATGACAACACACATGTGTGCA
TCTTTAGTCATTGGCTGTTATATCTGTGGTTTCCTCAGTGCTTCCATCTATACTATGGATGCATTAAGTC
TCTCCTTCTGTGAATCTAATGTGATCCATCATTTCTTCTGTGATGTCCTTGCAGTAATGATTGTATCTTG
TTCTGATAGCCATGTTAATGAACTGATTCTTATTTATGTAGTCAGCTTCAATATGTTTTTTGCCCTTATA
ATCATCTTAATATCCTACATGTTCATTTTCACCAACATACTGAAGATCCACTCATCTGCAGGATATCACA
AAGCTGTTTCCACATGTGCCTCGCACTTCACAGCAGTCTCTATTTTCTATGGGACTATCATATTCATGTA
CTTGCAGCCTAGCTCCAGTCACACCATGGACACTGACAAAATTGCATCTGTGTTCTACACCATGGTCATC
TGCATGTTGAACCCTCTGGTTTACAGCCTGAGGAGCAAGGATGTGAAAAGCGCATTCACAAAAATTGTAT
TGAGGTCAAAATGA

Translation (307 aa):
MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFC
YSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCA
SLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALI
IILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVI
CMLNPLVYSLRSKDVKSAFTKIVLRSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH