NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52725.1 Public Mus musculus 9 Hephl1 23 108 98 CCDS HistoryNCBI Gene:244698Re-query CCDS DB by CCDS ID:52725.1Re-query CCDS DB by GeneID:244698See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52725.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159985.1 ENSMUSP00000124518.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159985.1Link to Ensembl Protein Viewer:ENSMUSP00000124518.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159985Re-query CCDS DB by Protein ID:ENSMUSP00000124518
Original member Current member NCBI NM_001164797.1 NP_001158269.1 Accepted alive Link to Nucleotide Sequence:NM_001164797.1Link to Protein Sequence:NP_001158269.1Re-query CCDS DB by Nucleotide ID:NM_001164797Re-query CCDS DB by Protein ID:NP_001158269Link to BLAST:NP_001158269.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158269.1 1159 Q3V1H3 1159 100% 0 0

Chromosomal Locations for CCDS 52725.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 15053618 15053820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15053916 15053987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15054451 15054613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15059155 15059294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15060741 15060963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15062056 15062162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15067037 15067177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15069704 15069843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15074068 15074281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15076734 15076946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15080077 15080227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15081824 15082035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15084230 15084361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15084456 15084595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15086140 15086308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15088895 15089149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15090023 15090202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15090420 15090632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15097883 15098127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15111938 15112104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3480 nt):
ATGTTTCTGAAGCAGCCGGGTGGCTGCATCCTTCTCCAGTTCCTGGGTCTGCTTGGACTAGTTGGTGCAG
TCACCAGAACATACTACATTGGGATTGTGGAGGAATACTGGAACTATGTGCCTCAAGGGAAGGATGTTAT
TACCGGGAAGAGTTTCTCAGAAGACAAACTTGCGACCTTATTTCTGGAGCGAGGGCCCAACAGGATAGGT
GGGATCTACAAGAAGGCGGTTTATAGACACTTCACAGATGGGAGCTACTCCACGGAGATTCCCAAACCCC
CCTGGCTGGGGTTTCTGGGTCCCATCCTGAGGGCAGAAGTGGGAGACGTGATCGTTATCCACCTGATGAA
CTTTGCTTCCAGACCTTTCTCTTTGCACCCTCACGGTGTTTTCTACGACAAGGATTCGGAAGGAGCCTTA
TACCCAGATGGGACATCTGGAAGGAACAAGGAAGATGACATGGTCCCCCCTGGCAAAAACTACACCTATG
TCTGGCCAGTGAGAGAAGAATATGCACCTGCTCCAGCAGATGCCAACTGCCTGACCTGGGTGTACCACTC
ACACATTGATGCCCCTAAGGATATCTGCTCTGGGCTAATTGGCCCCCTGCTGGTGTGTAAGGAAGGTGTA
CTGAATAGATACTCAGGGATGAGGACTGATGTGGACCGAGAGTTTGTTATCATGTTCACTCTTGTGGATG
AGAACCAGAGCTGGTATCTGGATGACAACATCAAGCAATTCTGCACTAATCCAAATTCCGTTGACAAAAG
TGATGCTGTTTTCCAGAGGAGCAACAAGATGCATGCCCTCAATGGATTCCTTTTTGGAAACATGCCTGAG
CCTGAGATGTGCGTTGGCGAATCTGTGTCCTGGCACCTGTTTGGGATGGGGAATGAGATAGACATCCATT
CCATCTATTTTTATGGTAACACCTTCATCACCAGAGGGCACCGGGCAGATGTTGTCAACCTGTTTCCAGC
TACCTTCCTCACAACAGAAATGATAGTGGAGAATCCTGGGAAATGGATGATAACCTGCCAAGTCAGTGAC
CACCTGCAAGCTGGTATGCTGGGACAGTACAGCGTGGGCAACTGCAGGGGTAATGCTCCTCACCCAAAGG
TGCAGGGTCAACAGCGGCGCTACTTCATAGCGGCTGAAAAAGTCCTCTGGGATTATGGTCCCCAAGGCTA
TGATAAATTCACTGGATTTCCCCTGAATACATCTGGCAGTGACTCTGCAGTGTACTTCACACAAGCTGAC
AACAGAATAGGAGGAAAATATTGGAAGGCTCGGTACACGGAGTATGTTGATGCCACTTTCAGTAGAAGAA
AGATGCCCTCTGATTCAGAAGCCCATCTTGGAATCCTTGGTCCAGTCATCAAAGCAGAGGTGGGTGACAT
CCTGCTAGTGACCTTTGCCAACAAAGCTGACAAAGTCTACAGCATCTTACCCCATGGCGTGTTCTATGAC
AAAGCATCAGATGCAGCTCCAAATGTAGATGGATTTCTGAAACCAGGGGCTCACGTCAAGCCAGGTGAAA
CCTTCACCTACAGGTGGACAGTGCCAGAAAGCGTCAGCCCGACAGATGAAGACCCCCCGTGCCTGACCTA
TCTTTACTTCTCAGCGGTCCAGCCTATCAAGGACACTAGTGCTGGGCTTGTGGGGCCTTTGTTGGTCTGC
AAAAAGGGCACGCTCAATGCCGATGGGACACAGAAAGGAATAGACAAGGAATTTTACCTACTGTTCACAG
TCTTTGATGAGAATTTCAGCAGCTATCTTGATGAAAACATCAAAAAGTTTACTTGGCATCCCTTCAGTGT
TGACAAAGAAGACAAGGAGTTTGTGAAATCCAATCGGATGCATGCTGTTAACGGCTACATGTACGGCAGC
CAGCCAGGCCTGAGCATGTGCAAGAAGGACAGAGTTTCCTGGCACTTGATTGGAATGGGCACCGACACAG
ATATGCATGGAGTTTATTTCCAAGGCAACACCATCCACCTACGAGGGACTCATCGTGACTCCCTGGCTCT
GTTTCCCCATATGGCCACAACGGCATACATGCAGCCAGACCATTCAGGTATTTTCAAGGTGTTCTGTTCC
ACCTTACCCCACTTCACGAGAGGCATGGGTCAGATCTATGAGATCAGCAGCTGTGGCAACAGGGACCCTT
CTGAGCCGCCCTACGGGATGCTAAGAACCTTTTTCATCGCCGCTGAAGAGGTAGAATGGGATTATGCCCC
TAACAAAAACTGGGAGTTCGAAAAGCAGCACTTGGACGCAGGAGGGGAAAGACATGGAGATATATTTATG
AACCACACTGAAAACTGGATTGGCTCTCAGTACAGGAAGGTTGTTTATAGGGAATATACAAATGGAGAAT
TTGTGGAGATTAAAGCTCGGCCACCTCAAGAAGAGCACCTTCAACTCCTGGGACCAATGATTCATGCTGA
GGTGGGGGACTCCATTCTCATTATCTTTAAGAACAAAGCCAGCCGGCCCTACTCCATTGCAGCCCAAGGT
GTGGAGGACTCAAACAATGGAAAACTCCTTAATGTGCCTGTCACAAAGCCAGGAGAAATCAAAACTTACA
GATGGAATGTCCCGAAGAGATCCGGTCCTGGGCCCTCTGATCCCAATTGTATTCCATGGGTTTACTTTTC
AACAGCAAATTTTGTGAAGGATACATACAGTGGTTTGATGGGGCCTCTGATCACATGTCGAGAGGGGGTG
CTAAACGAAAAGGGAAGAAGAAGCGATGTTGACTATGAGTTTGCACTGTTGTTCCTGGTCTTCAATGAGA
ATGAGTCATGGTATCTGGATGACAATATCAAGAAGTATCTCAATAAAGATCCACGGGATTTCAAGCACAC
AGACGACTTTGAAGAGAGCAACAAAATGCATGCCATTAATGGAAAGATTTTTGGAAACCTCCCTGGTCTC
ATAATGACTGAAGACTCAATGACTAACTGGTATCTGCTGGGCATCGGAAGTGAAGTGGACATACACACAA
TCCATTACCATGCAGAGAGCTTTCTGTTCAAAATAGATAAGTCCTACCGAGAAGATGTGTATGATCTCTT
TCCTGGGACATTTCAAACCATTGAGCTGTTTGCTGATCACCCAGGAACATGGCTTCTTCACTGCCATGTG
TCCGACCACATTCATGCTGGCATGGAGACCACCTACACTGTCCTCAGGAACATAGACAACAGGATTCCAT
ATTCTACCAAGACGCCTTCTGGAGCAGGATCTCACGCAGTCACAGTGCCCTCCCAGGAACAACCTGGCAA
GGAAGAGCTCTATTTCTTTGGCAAGAATCTGCGTCCAAGAGGAGCCAAGGCAGCCCTGGTCATCCTTTTC
ATCCTGGGACTCCTCCTTCTAGTGGCCACCGTGGTTCTCGCCCTCAGACTCCGATCTTCAAGGAGGCAGA
TGGCTTACAGGGAAGTCCAGTCCTGTGCACTCCCCACGGATGCTCTGTGA

Translation (1159 aa):
MFLKQPGGCILLQFLGLLGLVGAVTRTYYIGIVEEYWNYVPQGKDVITGKSFSEDKLATLFLERGPNRIG
GIYKKAVYRHFTDGSYSTEIPKPPWLGFLGPILRAEVGDVIVIHLMNFASRPFSLHPHGVFYDKDSEGAL
YPDGTSGRNKEDDMVPPGKNYTYVWPVREEYAPAPADANCLTWVYHSHIDAPKDICSGLIGPLLVCKEGV
LNRYSGMRTDVDREFVIMFTLVDENQSWYLDDNIKQFCTNPNSVDKSDAVFQRSNKMHALNGFLFGNMPE
PEMCVGESVSWHLFGMGNEIDIHSIYFYGNTFITRGHRADVVNLFPATFLTTEMIVENPGKWMITCQVSD
HLQAGMLGQYSVGNCRGNAPHPKVQGQQRRYFIAAEKVLWDYGPQGYDKFTGFPLNTSGSDSAVYFTQAD
NRIGGKYWKARYTEYVDATFSRRKMPSDSEAHLGILGPVIKAEVGDILLVTFANKADKVYSILPHGVFYD
KASDAAPNVDGFLKPGAHVKPGETFTYRWTVPESVSPTDEDPPCLTYLYFSAVQPIKDTSAGLVGPLLVC
KKGTLNADGTQKGIDKEFYLLFTVFDENFSSYLDENIKKFTWHPFSVDKEDKEFVKSNRMHAVNGYMYGS
QPGLSMCKKDRVSWHLIGMGTDTDMHGVYFQGNTIHLRGTHRDSLALFPHMATTAYMQPDHSGIFKVFCS
TLPHFTRGMGQIYEISSCGNRDPSEPPYGMLRTFFIAAEEVEWDYAPNKNWEFEKQHLDAGGERHGDIFM
NHTENWIGSQYRKVVYREYTNGEFVEIKARPPQEEHLQLLGPMIHAEVGDSILIIFKNKASRPYSIAAQG
VEDSNNGKLLNVPVTKPGEIKTYRWNVPKRSGPGPSDPNCIPWVYFSTANFVKDTYSGLMGPLITCREGV
LNEKGRRSDVDYEFALLFLVFNENESWYLDDNIKKYLNKDPRDFKHTDDFEESNKMHAINGKIFGNLPGL
IMTEDSMTNWYLLGIGSEVDIHTIHYHAESFLFKIDKSYREDVYDLFPGTFQTIELFADHPGTWLLHCHV
SDHIHAGMETTYTVLRNIDNRIPYSTKTPSGAGSHAVTVPSQEQPGKEELYFFGKNLRPRGAKAALVILF
ILGLLLLVATVVLALRLRSSRRQMAYREVQSCALPTDAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH