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Report for CCDS29618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29618.1 Public Mus musculus 19 Or4d11 23 108 98 CCDS HistoryNCBI Gene:258675Re-query CCDS DB by CCDS ID:29618.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29618.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087831.1 ENSMUSP00000085134.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087831.1Link to Ensembl Protein Viewer:ENSMUSP00000085134.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000087831Re-query CCDS DB by Protein ID:ENSMUSP00000085134
Original member Current member EBI ENSMUST00000214472.1 ENSMUSP00000150649.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214472.1Link to Ensembl Protein Viewer:ENSMUSP00000150649.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214472Re-query CCDS DB by Protein ID:ENSMUSP00000150649
Original member Current member NCBI NM_146680.1 NP_666891.1 Accepted alive Link to Nucleotide Sequence:NM_146680.1Link to Protein Sequence:NP_666891.1Re-query CCDS DB by Nucleotide ID:NM_146680Re-query CCDS DB by Protein ID:NP_666891Link to BLAST:NP_666891.1

Chromosomal Locations for CCDS 29618.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12035808 12036740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGAGCTGAGAAATGACACCAGAGTAAAAGAATTTATATTTCTGGGTCTCACTCAGTCACAACACCTGA
GCCTGGTCTTATGTCTTGTTTTGTGTTTTGTGTACGTGACAACTCTGCTTGGGAATCTGCTTATCATGAT
TATCGTGACCTTTGAGTCCCGTCTGCACACGCCCATGTACTTCCTGCTCCGAAACCTTGCCGTTCTAGAC
ATCTGCTTCTCCTCCATCACAGCCCCAAAGGTCTTGGTGGACCTTCTGGCAAAGAAAAAGACCATTTCCT
ACGCAAAATGCATGACACAGATGTTTTTCTTCCATCTGCTTGGTGGAGCAGACATTTTTTCTCTCTCTGT
GATGGCATTTGATCGATACATGGCCATCTCCAAGCCCCTGCACTATGTGACCATCATGAGTAGTAAGCGG
TGCACAGCCCTCATCGCGGCCTCCTGGGTGGGCGGCTTTGTCCACTCGATTGTGCAGATCTCCCTCTTGC
TCCCACTCCCCTTCTGTGGACCCAATGTTCTTGATACCTTCTACTGCGATGTCCCACAGGTTCTCAAACT
TGCCTGCACAGACACCTTTGTTCTTGAGCTCCTGATGATCTCAAACAATGGCCTGGTCACTACCCTATGG
TTTATCTTCCTTCTGGTGTCCTACATGGTCATCTTGATGATGTTGAGGTCTCAGGCAGGAGAAGACAGAA
GAAAAGCCATCTCCACCTGCACCTCCCACATCACTGTGGTCACCCTGCATTTTGTACCCTGCATCTATGT
CTACGCCAGACCATTCACTGCCCTCCCCACAGATAAAGCCATCTCTGTCACCTTCACAGTCATCTCTCCT
CTGTTGAACCCCTTGATCTATACTCTAAGGAACCAGGAAATGAAGTCAGCCATAAGAAGACTAAAGAGAA
AACTCACTCCTCTTGAAAAGTAA

Translation (310 aa):
MELRNDTRVKEFIFLGLTQSQHLSLVLCLVLCFVYVTTLLGNLLIMIIVTFESRLHTPMYFLLRNLAVLD
ICFSSITAPKVLVDLLAKKKTISYAKCMTQMFFFHLLGGADIFSLSVMAFDRYMAISKPLHYVTIMSSKR
CTALIAASWVGGFVHSIVQISLLLPLPFCGPNVLDTFYCDVPQVLKLACTDTFVLELLMISNNGLVTTLW
FIFLLVSYMVILMMLRSQAGEDRRKAISTCTSHITVVTLHFVPCIYVYARPFTALPTDKAISVTFTVISP
LLNPLIYTLRNQEMKSAIRRLKRKLTPLEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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