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Report for CCDS24348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24348.1 Public Mus musculus 10 Or9r3 23 108 98 CCDS HistoryNCBI Gene:258668Re-query CCDS DB by CCDS ID:24348.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081469.1 ENSMUSP00000080189.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081469.1Link to Ensembl Protein Viewer:ENSMUSP00000080189.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000081469Re-query CCDS DB by Protein ID:ENSMUSP00000080189
Original member Current member EBI ENSMUST00000213145.1 ENSMUSP00000150794.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213145.1Link to Ensembl Protein Viewer:ENSMUSP00000150794.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213145Re-query CCDS DB by Protein ID:ENSMUSP00000150794
Original member Current member NCBI NM_146673.2 NP_666884.2 Accepted alive Link to Nucleotide Sequence:NM_146673.2Link to Protein Sequence:NP_666884.2Re-query CCDS DB by Nucleotide ID:NM_146673Re-query CCDS DB by Protein ID:NP_666884Link to BLAST:NP_666884.2

Chromosomal Locations for CCDS 24348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 130111841 130112788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGAAACTGGAGCAGAGCAGGAACTATACTGAGCTGACAGACTTTATCCTGCTGGGATTCTGGACGTCTC
CAGAAGCACGGGTTCCCTTATTCTTACTGTTCTTGTTTATCTATCTGGTCATTGTATTGGGAAACCTCAG
CATGTTAACTGTCATTAAAATAGACTCCAGACTTCATACACCAATGTATTTCTTTCTCCAAAATTTATCC
TTTTTAGATCTCTGCTATTCCACAGTCATTGCACCCAAAGCTCTTGCTACTTTTTTCTCCAAGGAAAAGA
AAATTTCATATAATGAATGTGCAACACAGTTCTTTTTCTTTGCTCTTTTCGTTGGAACAGAAGGTTTCTT
TCTGGCTGTGATGGCTTATGACCGCTTCTCAGCCATTTGCTCGCCTTTCCTGTACACAGTCCATATGTCT
CAGCCAGCTTGTATTCGTTTGGTGGCTGGCTCCTATATCTGTGGATGCATCAACTCCATGATACAAACAG
GATTCACCTTCAGCTTGCGTTTCTGTGGAGAAAACAGGCTGGACCACTTTTTCTGTGATGTCCCAGCTCT
GATCAAGATCTCATGTGTTGACACTTTTGTGAATGAGATTGTGTTGTTTATTCTCTCTGCTCTCATCATC
ATCTCCACCATCACTATCATTCTGGTTTCCTATGCCTACATCCTTTCCACTGTCCTGAAGATCCCCTCCA
CCCATGGTAGGAGTAAAACCTTCTCTACATGTGGCTCTCATATAGCAGTGGTGAGTTTATTCTATGGAAC
AGTGTTCTTCATGTATGCTCAGCCTGGGTCCATCTCCTCCCCAGAGAAAAGCAAGATTGTAGCTGTATTC
TACACACTTATCATCCCAATGCTGAATCCTCTGATTTATAGCTTAAGGAATACAGAGGTAAAAAGTGCTT
TGAAGAAGACATTGCTGAGAAAAATACCCTGGCACTGA

Translation (315 aa):
MKLEQSRNYTELTDFILLGFWTSPEARVPLFLLFLFIYLVIVLGNLSMLTVIKIDSRLHTPMYFFLQNLS
FLDLCYSTVIAPKALATFFSKEKKISYNECATQFFFFALFVGTEGFFLAVMAYDRFSAICSPFLYTVHMS
QPACIRLVAGSYICGCINSMIQTGFTFSLRFCGENRLDHFFCDVPALIKISCVDTFVNEIVLFILSALII
ISTITIILVSYAYILSTVLKIPSTHGRSKTFSTCGSHIAVVSLFYGTVFFMYAQPGSISSPEKSKIVAVF
YTLIIPMLNPLIYSLRNTEVKSALKKTLLRKIPWH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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