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Report for CCDS16302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16302.1 Public Mus musculus 2 Or5w12 23 108 98 CCDS HistoryNCBI Gene:258654Re-query CCDS DB by CCDS ID:16302.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16302.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099853.1 ENSMUSP00000097439.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099853.1Link to Ensembl Protein Viewer:ENSMUSP00000097439.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099853Re-query CCDS DB by Protein ID:ENSMUSP00000097439
Original member Current member EBI ENSMUST00000213835.1 ENSMUSP00000150079.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213835.1Link to Ensembl Protein Viewer:ENSMUSP00000150079.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213835Re-query CCDS DB by Protein ID:ENSMUSP00000150079
Original member Current member NCBI NM_146660.2 NP_666871.2 Accepted alive Link to Nucleotide Sequence:NM_146660.2Link to Protein Sequence:NP_666871.2Re-query CCDS DB by Nucleotide ID:NM_146660Re-query CCDS DB by Protein ID:NP_666871Link to BLAST:NP_666871.2

Chromosomal Locations for CCDS 16302.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87671433 87672365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGATGAAGGAAACTGCTCCTCAAACACTGAATTTGTTTTACTGGGAATCACTAATAACCCTAGCATGA
AAGTGGGTCTATTCATTGTATTTCTTATCATCTATCTCATTATTCTTGTGGCAAATATTGGAATGATTGT
TTTGATTAAACTGGATCCCCAGCTTCACACACCAATGTACTTCTTCCTCAGCCATCTCTCTTTCTCAGAC
CTCTGCTATTCCACTGCAGTTGGACCAAAGATGCTAGTTGACCTAATGGTCAAGCAGAAAATCATTCCTT
TTGTTGGCTGTGCATTGCAATTTTTTTTCACCTGTATCTTTGTAGATGCTGAGTGCATGCTGCTGGCAGT
GATGGCCTTTGATCGGTACAAGGCCATCAGCAATCCTCTGATGTATGTAGTCGGTATGTCCAGTAAATTT
TGCTATCAACTCCTAGCTGGAGTTTACCTAGTAGGAATGATAGATACTGTGATACACACTATAATGACCT
TTGGGTTATGTTTCTGTGGATCTAATGAGATCAATCATTTTTTCTGTGACATCCCTCCTATCCTGCTACT
ATCTTGCTCAGATACACAGACCAATGAGTTAATCACCTTTGTTATTTTTGGGTTCATTGAACTGAGCACC
ATCTCAGGAGTCCTGGTCTCCTACTGTTACATCATCTCATCAGTCTTAAAAATCCGCTCCACTGATGGGA
GGTTCAAAGCTTTCTCCACCTGTGCCTCTCACTTAACTGCAGTTGCCATTTTCCAGGGAACACTGCTCTT
CATGTATTTTCGTCCTGCTTCTGCTTACTCTCTGGATCAGGACAAAATCACCTCACTTTTTTATACCCTG
GTGATCCCCATGCTTAACCCTCTGATTTACAGCCTAAGGAACAAGGATGTACAAGAGGCCCTGCAGAAAC
TGAAAAAGAAAATATTCTTTTAA

Translation (310 aa):
MDEGNCSSNTEFVLLGITNNPSMKVGLFIVFLIIYLIILVANIGMIVLIKLDPQLHTPMYFFLSHLSFSD
LCYSTAVGPKMLVDLMVKQKIIPFVGCALQFFFTCIFVDAECMLLAVMAFDRYKAISNPLMYVVGMSSKF
CYQLLAGVYLVGMIDTVIHTIMTFGLCFCGSNEINHFFCDIPPILLLSCSDTQTNELITFVIFGFIELST
ISGVLVSYCYIISSVLKIRSTDGRFKAFSTCASHLTAVAIFQGTLLFMYFRPASAYSLDQDKITSLFYTL
VIPMLNPLIYSLRNKDVQEALQKLKKKIFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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