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Report for CCDS20086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20086.1 Public Mus musculus 6 Or2a54 23 108 98 CCDS HistoryNCBI Gene:258649Re-query CCDS DB by CCDS ID:20086.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095954.3 ENSMUSP00000093648.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095954.3Link to Ensembl Protein Viewer:ENSMUSP00000093648.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095954Re-query CCDS DB by Protein ID:ENSMUSP00000093648
Original member Current member EBI ENSMUST00000213649.1 ENSMUSP00000150572.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213649.1Link to Ensembl Protein Viewer:ENSMUSP00000150572.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213649Re-query CCDS DB by Protein ID:ENSMUSP00000150572
Original member Current member NCBI NM_146655.1 NP_666866.1 Accepted alive Link to Nucleotide Sequence:NM_146655.1Link to Protein Sequence:NP_666866.1Re-query CCDS DB by Nucleotide ID:NM_146655Re-query CCDS DB by Protein ID:NP_666866Link to BLAST:NP_666866.1

Chromosomal Locations for CCDS 20086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43115744 43116676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAGAGCCAATCAGACATGGATCACAGAGGTCACTCTACTGGGATTCCAAGCTGACCTAGCTGTGGAGT
GTTTCCTCTTCGGGCTTTTCTCTCTGTTTTATTCCTTTACCCTTCTGGGGAATGGAATCATCCTTGTAGT
AATCTGCCTGGACAACAGACTGCACACACCCATGTACTTCTTCCTCTCTCATCTGGCCATTGTTGACATG
TCCTATGCTTCCAATAATGTCCCCAAGATGCTGGCAAATCTTGTGACTCAAAGAAGAACCATCTCCTTCA
TTCCATGTATAATGCAAACATTCTTGTATCTGGCCTTTGCTTCCATAGAGTGCCTGATTTTAGTGGTAAT
GTCCTATGATAGGTTTGTTGCCATCTGCCACCCCCTTCACTACACTGTCATCATGAGCTGGAGAGTGTGT
ACCATAATGGCTGCTGTCTCCTGGATAGTTGGCTTCCTTTTGGCTCTTGTCCATTTAATTCTCATCCTGA
GGCTGCCTTTCTGTGGGCCTCATAAAGTCAATCACTTCTTCTGTGAAATCCTGTCTGTCCTCAAGCTGGC
CTGTGCTGACACAACACTCAATCAAGTTGTCATCTTTGCAGCTTGTGTGTTCATTTTAGTGGGACCACTG
TGCATGGTGCTGGTCTCCTACACACGCATCCTGGTGGCCATCCTGAGAATCCAGTCAGGGGAAGGTCGCA
GAAAGGCTTTCTCTACCTGTTCCTCCCACCTCTGTGTGGTAGGGCTCTTCTTTGGCAGTGCCATTGTCAT
GTACATGGCCCCCAAATCCCAGCACCCTGAAATGCAGCAAAAGATCCTTTCCCTGTTTTATAGCCTTTTC
AATCCTATGTTGAACCCCCTGATCTACTGCCTGAGGAATGCTGAGGTCAAGGGTGCCCTCAGGAGGTCAC
TGTTGAAGGAAAGATCAATGTGA

Translation (310 aa):
MRANQTWITEVTLLGFQADLAVECFLFGLFSLFYSFTLLGNGIILVVICLDNRLHTPMYFFLSHLAIVDM
SYASNNVPKMLANLVTQRRTISFIPCIMQTFLYLAFASIECLILVVMSYDRFVAICHPLHYTVIMSWRVC
TIMAAVSWIVGFLLALVHLILILRLPFCGPHKVNHFFCEILSVLKLACADTTLNQVVIFAACVFILVGPL
CMVLVSYTRILVAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSQHPEMQQKILSLFYSLF
NPMLNPLIYCLRNAEVKGALRRSLLKERSM


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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