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Report for CCDS29676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29676.1 Public Mus musculus 19 Or9i2 23 108 98 CCDS HistoryNCBI Gene:258626Re-query CCDS DB by CCDS ID:29676.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073966.1 ENSMUSP00000073620.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073966.1Link to Ensembl Protein Viewer:ENSMUSP00000073620.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000073966Re-query CCDS DB by Protein ID:ENSMUSP00000073620
Original member Current member EBI ENSMUST00000208493.2 ENSMUSP00000147096.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208493.2Link to Ensembl Protein Viewer:ENSMUSP00000147096.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208493Re-query CCDS DB by Protein ID:ENSMUSP00000147096
Original member Current member EBI ENSMUST00000215350.1 ENSMUSP00000151094.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215350.1Link to Ensembl Protein Viewer:ENSMUSP00000151094.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215350Re-query CCDS DB by Protein ID:ENSMUSP00000151094
Original member Current member NCBI NM_146633.2 NP_666844.1 Accepted alive Link to Nucleotide Sequence:NM_146633.2Link to Protein Sequence:NP_666844.1Re-query CCDS DB by Nucleotide ID:NM_146633Re-query CCDS DB by Protein ID:NP_666844Link to BLAST:NP_666844.1

Chromosomal Locations for CCDS 29676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13838224 13839171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGCAGACAATGGCACCAGATTGACAGAATTTATTCTCATAGGATTCCAGCTTCAGGCAGAGCTACAGT
TGTGTCTCTTCTTCATATTTTTGGCCTTTTATCTCATCACCATTGTTGGAAACCTGGGAATGATCATGCT
AATTCAGAGTGACCCTCGGCTCCAAACACCCATGTACTTCTTTCTCAGCCATCTGTCCTTCCTGGATGTT
TGCTACTCATCTGTTATTGTGCCTCAGCTGCTGGAGACCTTGGGGAGTAATAAGATGGTCATCACTTATG
AGCGCTGTGCTACACAGTTCTTCTTTTTCACGTTGTATGCTAGTACTGAGTGCTTCCTTTTGGCTGTGAT
GGCTTATGACCGCTATGTGGCTGTTTGTAACCCGCTCCTTTATGCGATGGCCATGACACCACAGACTCGT
CTGGGGCTGGTTGCTGCAGCATATTCTGGTGCAATGGTAAATACTGTGGTACGAACTGGGTGTACTTTTT
CCATTTCCTTTTGTAAATCCAATCAAGTTGATTTCTTTTTTTGTGACCTCCCACCCCTGCTGAAGCTTTC
CTGTAGTGAGACTAAGTTACGCGAACAGGTCATCTTCCTTTTTGCTTTTTTGGTCATCACAACTAGTGTT
TCAGTGATTCTTGTATCTTACCTATTCATTATCTGGGCTATTCTGAAGATTCGTACAGCAGGAGCCAAAG
CCAAGACCTTCTCTACCTGTGCATCTCACATGATTGCAGTGGCTCTATTTTTTGGAACACTCATATTTAT
GTACCTGAAAGGTAACATGGGCAAATCCCTCTGGCAAGACAAGATTGTGTCTGTATTCTATACTGTGGTG
ATCCCCATGTTGAACCCCATGATCTATAGCCTGAGGAACAAGGAAGTGAAGGAGGCTCTGAAGAAAGCTT
TCAAAAGAATTAAGGCTTCTCAAGAAAGTAAGACTTAA

Translation (315 aa):
MADNGTRLTEFILIGFQLQAELQLCLFFIFLAFYLITIVGNLGMIMLIQSDPRLQTPMYFFLSHLSFLDV
CYSSVIVPQLLETLGSNKMVITYERCATQFFFFTLYASTECFLLAVMAYDRYVAVCNPLLYAMAMTPQTR
LGLVAAAYSGAMVNTVVRTGCTFSISFCKSNQVDFFFCDLPPLLKLSCSETKLREQVIFLFAFLVITTSV
SVILVSYLFIIWAILKIRTAGAKAKTFSTCASHMIAVALFFGTLIFMYLKGNMGKSLWQDKIVSVFYTVV
IPMLNPMIYSLRNKEVKEALKKAFKRIKASQESKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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