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Report for CCDS23065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23065.1 Public Mus musculus 9 Or8g2 23 108 98 CCDS HistoryNCBI Gene:258606Re-query CCDS DB by CCDS ID:23065.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23065.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076802.2 ENSMUSP00000076080.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076802.2Link to Ensembl Protein Viewer:ENSMUSP00000076080.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000076802Re-query CCDS DB by Protein ID:ENSMUSP00000076080
Original member Current member EBI ENSMUST00000214904.1 ENSMUSP00000149063.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214904.1Link to Ensembl Protein Viewer:ENSMUSP00000149063.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214904Re-query CCDS DB by Protein ID:ENSMUSP00000149063
Original member Current member NCBI NM_146613.1 NP_666824.1 Accepted alive Link to Nucleotide Sequence:NM_146613.1Link to Protein Sequence:NP_666824.1Re-query CCDS DB by Nucleotide ID:NM_146613Re-query CCDS DB by Protein ID:NP_666824Link to BLAST:NP_666824.1

Chromosomal Locations for CCDS 23065.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39909805 39910728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGGGACTGGAAACCATTCAATGGTAACTGAATTTATCTTGGCTGGATTCTCAACCAAACCAGAGCTGC
ACCTGCCCCTCTTCCTCCTCTTCCTTGGAATCTACCTTCTCACAGTACTGGGGAACCTGGGCATGATCAT
CCTGATTCTACTCAGCTCACACCTGCACACCCCTATGTACTTCTTTCTCAGCAGTCTGTCCTTCATTGAC
CTCTGCCATTCCACTGTCATTACCCCCAAAATGCTGGTAAACTTTGTCACAGAGAAGAACATAATCTCCT
ACCCTGAGTGCATGACTCAGCTCTACTGCTTCCTTGTTTTCGCAATTGCAGAGTGTCACATGTTGGCTGT
GATGGCATATGACCGCTATGTTGCCATCTGTAACCCTTTACTTTACAATGTTGTCATGTCTCATCATCTC
TGCTTCTGGCTCACCGTGGGAGTTTACAGTTTGGGTATTGTTGGATCATCAGTTCACACAGGCTTTATGT
TAAAATTAAATTTTTGCAAGATTAATGTGATTAACCATTATTTTTGTGATCTTTTTCCTCTCTTGGAGCT
ATCATGCTCTAGTATATACATCAATGAACTCTTGGTTCTTTTCTTGAGTGCATTGAATATCCTGACACCT
GCATTGACCATCCTTATGTCCTACATCTTCATCATTGTCAGCATCCTCCGTATTCGCTCCACTGAGGGCA
GGTCCAAAGCCTTTAGCACCTGCAGTTCCCACATCTCTGCTGTTGCCATCTTCTATGGTTCTGCTGCATT
TATGTACTTACAGCCATCATCAGTAAGTTCGATGGACCAAGGGAAAGTGTCCTCTGTGTTTTATACTACT
GTTGTTCCCATGCTGAACCCATTGATCTACAGCCTGAGAAATAAGGATGTCAAATCTGCTGTAAAGAAAA
TTCTAAACAGATGA

Translation (307 aa):
MGTGNHSMVTEFILAGFSTKPELHLPLFLLFLGIYLLTVLGNLGMIILILLSSHLHTPMYFFLSSLSFID
LCHSTVITPKMLVNFVTEKNIISYPECMTQLYCFLVFAIAECHMLAVMAYDRYVAICNPLLYNVVMSHHL
CFWLTVGVYSLGIVGSSVHTGFMLKLNFCKINVINHYFCDLFPLLELSCSSIYINELLVLFLSALNILTP
ALTILMSYIFIIVSILRIRSTEGRSKAFSTCSSHISAVAIFYGSAAFMYLQPSSVSSMDQGKVSSVFYTT
VVPMLNPLIYSLRNKDVKSAVKKILNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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