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Report for CCDS22852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22852.1 Public Mus musculus 9 Or7g21 23 108 98 CCDS HistoryNCBI Gene:258557Re-query CCDS DB by CCDS ID:22852.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074986.6 ENSMUSP00000074514.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074986.6Link to Ensembl Protein Viewer:ENSMUSP00000074514.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000074986Re-query CCDS DB by Protein ID:ENSMUSP00000074514
Original member Current member NCBI NM_146564.2 NP_666775.1 Accepted alive Link to Nucleotide Sequence:NM_146564.2Link to Protein Sequence:NP_666775.1Re-query CCDS DB by Nucleotide ID:NM_146564Re-query CCDS DB by Protein ID:NP_666775Link to BLAST:NP_666775.1

Chromosomal Locations for CCDS 22852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 19120957 19121910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGTGCAAAATGGAAGTTGAAAACAAATCAGTTGTTTTTGATATTTTTCTTCATGGACTTACAGATGATA
CAGAGCTTCAGCCCTTTATCTTTGGCCTTTTTCTATGCATGTATTTGATCACCATCTTTGGAAATCTTCT
TATAATATTGGCCATCATTTGTGACTCTCACCTCCACACACCCATGTACTTCTTTCTCTGCCATCTGGCT
TTTAATGACATGTATTTAATCAGCATTACAGTCCCAAAGATGTTGGTGAATATACAAACACAGGATCAGA
GGATCACTTTTGCTGGCTGCCTGAGCCAGGGATGCTTTGTTGCTGTTTGTACCATCTTTGAGTGTTTTCT
CCTTGGAATAATGGCCTATGACCGCTTCATAGCCATTTGTTATCCTCTAAGATACACAGTCCTCATGAAT
CCCTGCTTCTGTGTTATTCTGACTCTTATCTCTCTATTCTTTAGTATTGTAAATGGTCTGCTGCATAGTC
TGATGGTGCTGCACTTGTCCTTCTGCACAGACCTGGAAATCCTCCACTTCTTCTGTGAAATTGCACAAAT
CCTCAAGCTTGCCTGTTCTGACAGCCTAATCAACAACATCTTGATATTTGTTACATCTTCTATTTTTGCT
GGTGTTCCTCTATGTGGAATAATCTTTTCTTATGTTCACATTGTTTCTACAGTGTTGAAAATGCCATCAT
TAGAAGGAAAGTACAAAGCCTTCTCCACGTGTGGGTCTCATTTATCAGTTGTTTCCTTGTTCTATGGGAC
AGGTTTTGGTGTATACATTTCCTCAAATGTAATTGATTCACCAAAGAAGATTGCCATGGCTTCAGTGATG
TATTCAATAGTTCCTCCAATGATGAATCCCTTTATCTATAGTATGAGGAACAGGAATATGAAAGAGGCAT
TGAAGAAGGTAATTGGTAGGAAGCTTCTTTTCTCTGATGTGTGA

Translation (317 aa):
MCKMEVENKSVVFDIFLHGLTDDTELQPFIFGLFLCMYLITIFGNLLIILAIICDSHLHTPMYFFLCHLA
FNDMYLISITVPKMLVNIQTQDQRITFAGCLSQGCFVAVCTIFECFLLGIMAYDRFIAICYPLRYTVLMN
PCFCVILTLISLFFSIVNGLLHSLMVLHLSFCTDLEILHFFCEIAQILKLACSDSLINNILIFVTSSIFA
GVPLCGIIFSYVHIVSTVLKMPSLEGKYKAFSTCGSHLSVVSLFYGTGFGVYISSNVIDSPKKIAMASVM
YSIVPPMMNPFIYSMRNRNMKEALKKVIGRKLLFSDV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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