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Report for CCDS26284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26284.1 Public Mus musculus 13 Or2w6 23 108 98 CCDS HistoryNCBI Gene:258534Re-query CCDS DB by CCDS ID:26284.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26284.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055615.1 ENSMUSP00000062356.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055615.1Link to Ensembl Protein Viewer:ENSMUSP00000062356.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000055615Re-query CCDS DB by Protein ID:ENSMUSP00000062356
Original member Current member EBI ENSMUST00000214321.1 ENSMUSP00000150315.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214321.1Link to Ensembl Protein Viewer:ENSMUSP00000150315.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214321Re-query CCDS DB by Protein ID:ENSMUSP00000150315
Original member Current member NCBI NM_146541.2 NP_666752.1 Accepted alive Link to Nucleotide Sequence:NM_146541.2Link to Protein Sequence:NP_666752.1Re-query CCDS DB by Nucleotide ID:NM_146541Re-query CCDS DB by Protein ID:NP_666752Link to BLAST:NP_666752.1

Chromosomal Locations for CCDS 26284.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21658368 21659321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGTGGTTGCAAGTGATGGAAAAGGAAAACACGAGTTCTTTTGAAGGCTTCATCCTGGTGGGCTTCTCTG
ACCGTCCTCACCTAGAACTTATCCTCTTTGTGGTAGTTCTCTCCTTTTATCTGCTCACTCTTCTTGGCAA
CATGACCATCATCTTGCTTTCAGCTCTGGATTCCCGGCTGCACACACCCATGTATTTCTTTCTGGCCAAC
CTCTCATTCCTGGACATGTGTTTTACCACGGGTTCCATCCCACAGATGCTCTACAACCTCTGGGGTCCAG
ACAAGACCATCAGCTATGTGGGTTGTGCTATCCAACTGTACTTTGTCTTAGCCCTGGGAGGGGTAGAATG
TGTCCTCCTGGCTGTTATGGCATATGACCGCTACGCGGCTGTCTGCAAGCCCCTGCACTACACCGTCATC
ATGCATCCTCGTCTCTGCGGGCAGCTGGCTTCAGTGGCATGGTTGAGCGGCTTTGGCAATTCTCTCATCA
TGGCACCCCAGACGTTGATGTTGCCCCGCTGTGGACACAGGCGGGTGGACCACTTTCTCTGTGAGATGCC
GGCCCTGATTGGCATGGCCTGTGTGGACACTATGGCCTTGGAAGCACTGGCTTTTGCGTTGGCGATTTTT
ATCATCTTGGCACCGCTCATCCTCATCCTTATCTCCTATGGTTACATTGCCCGAGCAGTGTTTAGGATCA
AGTCAGCTGCTGGGCGACGGAAAGCCTTCAACACTTGCAGCTCCCACTTAATCGTTGTCTCTCTCTTCTA
CGGTACCATCATATACATGTACCTCCAGCCGGCAAACACTTACTCCCAAGACCAGGGCAAGTTTCTCACT
CTTTTCTACACCATTGTCACTCCTAGTGTTAACCCCCTGATCTACACTCTGAGAAACAAAGATGTCAAAG
AGGCCGTAAAGAAAGTGCTAGGGAAGGGGAGCATAGAAGTATAG

Translation (317 aa):
MWLQVMEKENTSSFEGFILVGFSDRPHLELILFVVVLSFYLLTLLGNMTIILLSALDSRLHTPMYFFLAN
LSFLDMCFTTGSIPQMLYNLWGPDKTISYVGCAIQLYFVLALGGVECVLLAVMAYDRYAAVCKPLHYTVI
MHPRLCGQLASVAWLSGFGNSLIMAPQTLMLPRCGHRRVDHFLCEMPALIGMACVDTMALEALAFALAIF
IILAPLILILISYGYIARAVFRIKSAAGRRKAFNTCSSHLIVVSLFYGTIIYMYLQPANTYSQDQGKFLT
LFYTIVTPSVNPLIYTLRNKDVKEAVKKVLGKGSIEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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