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Report for CCDS47077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47077.1 Public Homo sapiens 4 PARM1 24 110 108 CCDS HistoryNCBI Gene:25849Re-query CCDS DB by CCDS ID:47077.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47077.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307428.7 ENSP00000370224.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307428.7Link to Ensembl Protein Viewer:ENSP00000370224.3Re-query CCDS DB by Nucleotide ID:ENST00000307428Re-query CCDS DB by Protein ID:ENSP00000370224
Original member Current member NCBI NM_015393.4 NP_056208.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015393.4Link to Protein Sequence:NP_056208.2Re-query CCDS DB by Nucleotide ID:NM_015393Re-query CCDS DB by Protein ID:NP_056208Link to BLAST:NP_056208.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056208.2 310 Q6UWI2 310 100% 0 0

Chromosomal Locations for CCDS 47077.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 74933328 74933370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75012425 75013150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75033883 75033961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75046163 75046247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGTCTACAAGACTCTCTTCGCTCTTTGCATCTTAACTGCAGGATGGAGGGTACAGAGTCTGCCTACAT
CAGCTCCTTTGTCTGTTTCTCTTCCGACAAACATTGTACCACCGACCACCATCTGGACTAGCTCTCCACA
AAACACTGATGCAGACACTGCCTCCCCATCCAACGGCACTCACAACAACTCGGTGCTCCCAGTTACAGCA
TCAGCCCCAACATCTCTGCTTCCTAAGAACATTTCCATAGAGTCCAGAGAAGAGGAGATCACCAGCCCAG
GTTCGAATTGGGAAGGCACAAACACAGACCCCTCACCTTCTGGGTTCTCGTCAACAAGCGGTGGAGTCCA
CTTAACAACCACGTTGGAGGAACACAGCTCGGGCACTCCTGAAGCAGGCGTGGCAGCTACACTGTCGCAG
TCCGCTGCTGAGCCTCCCACACTCATCTCCCCTCAAGCTCCAGCCTCATCACCCTCATCCCTATCAACCT
CACCACCTGAGGTCTTTTCTGCCTCCGTTACTACCAACCATAGCTCCACTGTGACCAGCACCCAACCCAC
TGGAGCTCCAACTGCACCAGAGTCCCCGACAGAGGAGTCCAGCTCTGACCACACACCCACTTCACATGCC
ACAGCTGAGCCAGTACCCCAGGAGAAAACACCCCCAACAACTGTGTCAGGCAAAGTGATGTGTGAGCTCA
TAGACATGGAGACCACCACCACCTTTCCCAGGGTGATCATGCAGGAAGTAGAACATGCATTAAGTTCAGG
CAGCATCGCCGCCATTACCGTGACAGTCATTGCCGTGGTGCTGCTGGTGTTTGGAGTTGCAGCCTACCTA
AAAATCAGGCATTCCTCCTATGGAAGACTTTTGGACGACCATGACTACGGGTCCTGGGGAAACTACAACA
ACCCTCTGTACGATGACTCCTAA

Translation (310 aa):
MVYKTLFALCILTAGWRVQSLPTSAPLSVSLPTNIVPPTTIWTSSPQNTDADTASPSNGTHNNSVLPVTA
SAPTSLLPKNISIESREEEITSPGSNWEGTNTDPSPSGFSSTSGGVHLTTTLEEHSSGTPEAGVAATLSQ
SAAEPPTLISPQAPASSPSSLSTSPPEVFSASVTTNHSSTVTSTQPTGAPTAPESPTEESSSDHTPTSHA
TAEPVPQEKTPPTTVSGKVMCELIDMETTTTFPRVIMQEVEHALSSGSIAAITVTVIAVVLLVFGVAAYL
KIRHSSYGRLLDDHDYGSWGNYNNPLYDDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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